Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
232  structures 5955  species 12  interactions 39015  sequences 123  architectures

Clan: 6PGD_C (CL0106)

Summary

6-phosphogluconate dehydrogenase C-terminal-like superfamily Add an annotation

This helical domain is found associated with Rossmann domains.

This clan contains 6 families and the total number of domains in the clan is 39015. The clan was built by A Bateman.

Members

This clan contains the following 6 member families:

3HCDH 6PGD IlvC Mannitol_dh_C NAD_Gly3P_dh_C UDPG_MGDP_dh

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...

Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
3HCDH (PF00725) 10901 (27.9%) View
UDPG_MGDP_dh (PF00984) 6968 (17.9%) View
NAD_Gly3P_dh_C (PF07479) 5512 (14.1%) View
6PGD (PF00393) 5458 (14.0%) View
IlvC (PF01450) 5123 (13.1%) View
Mannitol_dh_C (PF08125) 5053 (13.0%) View
Total: 6 Total: 39015 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls

Hide

This tree shows the occurrence of the domains in this clan across different species. More...

Loading...

Interactions

There are 12 interactions for this clan. More...

Interacting families
A B
NAD_Gly3P_dh_C NAD_Gly3P_dh_N
NAD_Gly3P_dh_C
UDPG_MGDP_dh UDPG_MGDP_dh
UDPG_MGDP_dh_C
UDPG_MGDP_dh_N
IlvC IlvC
IlvN
6PGD 6PGD
NAD_binding_2
3HCDH Thiolase_N
3HCDH
3HCDH_N

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...