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584  structures 6487  species 8  interactions 23716  sequences 79  architectures

Clan: KOW (CL0107)

Summary

KOW domain Add an annotation

This superfamily includes proteins involved in translation that have a KOW like SH3-fold.

This clan contains 4 families and the total number of domains in the clan is 23716. The clan was built by A Bateman.

Members

This clan contains the following 4 member families:

EFP_N KOW Ribosomal_L21e Ribosomal_L2_C

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
KOW (PF00467) 10200 (43.0%) View
Ribosomal_L2_C (PF03947) 6875 (29.0%) View
EFP_N (PF08207) 5745 (24.2%) View
Ribosomal_L21e (PF01157) 896 (3.8%) View
Total: 4 Total: 23716 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 8 interactions for this clan. More...

Interacting families
A B
KOW KOW
eIF-5a
NusG
EFP_N
EFP_N KOW
EFP
eIF-5a
EFP_N

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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