Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
19  structures 4345  species 0  interactions 19864  sequences 303  architectures

Clan: GT-C (CL0111)

Summary

Glycosyl transferase GT-C superfamily Add an annotation

This is the GT-C clan that contains diverse glycosyltransferases that possess 8-13 predicted transmembrane segments [1].

This clan contains 21 families and the total number of domains in the clan is 19864. The clan was built by A Bateman.

Literature references

  1. Liu J, Mushegian A; , Protein Sci 2003;12:1418-1431.: Three monophyletic superfamilies account for the majority of the known glycosyltransferases. PUBMED:12824488 EPMC:12824488

Members

This clan contains the following 21 member families:

ALG3 Alg6_Alg8 Arabinose_trans DIE2_ALG10 DUF1420 DUF2029 DUF2079 DUF2142 DUF2723 EpsG Glucan_synthase Glyco_transf_22 Mannosyl_trans Mannosyl_trans2 Oleosin PIG-U PMT PMT_2 PTPS_related STT3 YfhO

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...

Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
PMT_2 (PF13231) 4872 (24.5%) View
PMT (PF02366) 2315 (11.7%) View
DUF2029 (PF09594) 2105 (10.6%) View
YfhO (PF09586) 1820 (9.2%) View
Glyco_transf_22 (PF03901) 1285 (6.5%) View
STT3 (PF02516) 968 (4.9%) View
EpsG (PF14897) 873 (4.4%) View
Glucan_synthase (PF02364) 769 (3.9%) View
Alg6_Alg8 (PF03155) 764 (3.8%) View
Mannosyl_trans2 (PF04188) 631 (3.2%) View
Arabinose_trans (PF04602) 497 (2.5%) View
continued
Pfam family Num. domains Alignment
DUF2142 (PF09913) 382 (1.9%) View
DIE2_ALG10 (PF04922) 365 (1.8%) View
DUF2723 (PF11028) 364 (1.8%) View
PIG-U (PF06728) 358 (1.8%) View
Oleosin (PF01277) 355 (1.8%) View
ALG3 (PF05208) 352 (1.8%) View
Mannosyl_trans (PF05007) 328 (1.7%) View
DUF2079 (PF09852) 276 (1.4%) View
PTPS_related (PF10131) 172 (0.9%) View
DUF1420 (PF07220) 13 (0.1%) View
Total: 21 Total: 19864 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls

Hide

This tree shows the occurrence of the domains in this clan across different species. More...

Loading...

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...