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628  structures 6834  species 33  interactions 87461  sequences 1382  architectures

Clan: Zn_Beta_Ribbon (CL0167)

Summary

Zinc beta-ribbon Add an annotation

A clan of zinc-binding ribbon domains.

This clan contains 50 families and the total number of domains in the clan is 87461. The clan was built by RD Finn.

Literature references

  1. Grishin NV; , J Mol Biol 2000;299:1165-1177.: C-terminal domains of Escherichia coli topoisomerase I belong to the zinc-ribbon superfamily. PUBMED:10873443 EPMC:10873443

Members

This clan contains the following 50 member families:

A2L_zn_ribbon Auto_anti-p27 Baculo_LEF5_C DNA_RNApol_7kD DUF1610 DUF1936 DUF2116 DUF2180 DUF2387 DZR Elf1 GATA NinF NOB1_Zn_bind Ogr_Delta OrfB_Zn_ribbon PhnA_Zn_Ribbon Prim_Zn_Ribbon Ribosomal_L32p Ribosomal_L37ae Ribosomal_S27 Ribosomal_S27e RNA_POL_M_15KD RRN7 Spt4 TF_Zn_Ribbon TFIIS_C Tnp_zf-ribbon_2 Topo_Zn_Ribbon Toprim_Crpt Trm112p UPF0547 zf-C4_Topoisom zf-CHC2 zf-DHHC zf-dskA_traR zf-FPG_IleRS zf-GRF zf-NADH-PPase zf-RanBP zf-ribbon_3 zf-TFIIB zinc-ribbons_6 zinc_ribbon_2 zinc_ribbon_4 zinc_ribbon_5 Zn-ribbon_8 Zn_ribbon_recom Zn_Tnp_IS1 Zn_Tnp_IS1595

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
zf-C4_Topoisom (PF01396) 10157 (11.6%) View
zf-FPG_IleRS (PF06827) 6847 (7.8%) View
OrfB_Zn_ribbon (PF07282) 6607 (7.6%) View
Ribosomal_L32p (PF01783) 5348 (6.1%) View
zf-CHC2 (PF01807) 5345 (6.1%) View
zf-dskA_traR (PF01258) 5127 (5.9%) View
zf-DHHC (PF01529) 4432 (5.1%) View
GATA (PF00320) 3798 (4.3%) View
Zn_ribbon_recom (PF13408) 3758 (4.3%) View
zf-RanBP (PF00641) 3729 (4.3%) View
Trm112p (PF03966) 2406 (2.8%) View
PhnA_Zn_Ribbon (PF08274) 2095 (2.4%) View
zf-NADH-PPase (PF09297) 1999 (2.3%) View
zf-ribbon_3 (PF13248) 1966 (2.2%) View
Topo_Zn_Ribbon (PF08272) 1903 (2.2%) View
TFIIS_C (PF01096) 1781 (2.0%) View
Zn-ribbon_8 (PF09723) 1432 (1.6%) View
DZR (PF12773) 1392 (1.6%) View
Zn_Tnp_IS1 (PF03811) 1346 (1.5%) View
zf-GRF (PF06839) 1335 (1.5%) View
Toprim_Crpt (PF13342) 1275 (1.5%) View
TF_Zn_Ribbon (PF08271) 1235 (1.4%) View
zinc_ribbon_2 (PF13240) 1062 (1.2%) View
Ogr_Delta (PF04606) 983 (1.1%) View
DUF2387 (PF09526) 844 (1.0%) View
Zn_Tnp_IS1595 (PF12760) 764 (0.9%) View
continued
Pfam family Num. domains Alignment
Ribosomal_S27e (PF01667) 748 (0.9%) View
Ribosomal_S27 (PF01599) 740 (0.8%) View
RNA_POL_M_15KD (PF02150) 723 (0.8%) View
zf-TFIIB (PF13453) 674 (0.8%) View
Prim_Zn_Ribbon (PF08273) 651 (0.7%) View
Ribosomal_L37ae (PF01780) 636 (0.7%) View
zinc-ribbons_6 (PF07191) 619 (0.7%) View
zinc_ribbon_5 (PF13719) 534 (0.6%) View
Spt4 (PF06093) 482 (0.6%) View
DNA_RNApol_7kD (PF03604) 397 (0.5%) View
Elf1 (PF05129) 383 (0.4%) View
NOB1_Zn_bind (PF08772) 331 (0.4%) View
Auto_anti-p27 (PF06677) 282 (0.3%) View
UPF0547 (PF10571) 219 (0.3%) View
DUF1610 (PF07754) 205 (0.2%) View
NinF (PF05810) 198 (0.2%) View
RRN7 (PF11781) 186 (0.2%) View
Tnp_zf-ribbon_2 (PF13842) 124 (0.1%) View
zinc_ribbon_4 (PF13717) 110 (0.1%) View
A2L_zn_ribbon (PF08792) 90 (0.1%) View
Baculo_LEF5_C (PF11792) 63 (0.1%) View
DUF2116 (PF09889) 52 (0.1%) View
DUF2180 (PF09947) 46 (0.1%) View
DUF1936 (PF09151) 2 (0.0%) View
Total: 50 Total: 87461 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

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Species distribution

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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