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360  structures 5236  species 5  interactions 48986  sequences 321  architectures

Clan: NUDIX (CL0261)

Summary

NUDIX superfamily Add an annotation

This superfamily contains the NUDIX family and one related family.

This clan contains 5 families and the total number of domains in the clan is 48986. The clan was built by A Bateman.

Literature references

  1. Gunawardana D, Likic VA, Gayler KR;, Comp Funct Genomics. 2009:820381. Epub 2009; [Epub ahead of print]: A Comprehensive Bioinformatics Analysis of the Nudix Superfamily in Arabidopsis thaliana. PUBMED:19590748 EPMC:19590748

Members

This clan contains the following 5 member families:

DBC1 NUDIX NUDIX-like NUDIX_2 NUDIX_4

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
NUDIX (PF00293) 43912 (89.6%) View
NUDIX_4 (PF14815) 3169 (6.5%) View
NUDIX-like (PF09296) 1383 (2.8%) View
NUDIX_2 (PF13869) 336 (0.7%) View
DBC1 (PF14443) 186 (0.4%) View
Total: 5 Total: 48986 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 5 interactions for this clan. More...

Interacting families
A B
NUDIX-like NUDIX
zf-NADH-PPase
NUDIX NUDIX
DCP2
NUDIX-like

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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