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<h1>Family: <em>Ank</em> (PF00023)</h1>


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    <h1>Summary: Ankyrin repeat</h1>
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                <h1 class="firstHeading">
                  Ankyrin repeat
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                <table class="infobox" style="width: 22em; text-align: left; font-size: 88%; line-height: 1.5em">
<tr>
<th colspan="2" style="font-size: 125%; text-align: center">Ankyrin repeat domain</th>
</tr>
<tr>
<td colspan="2" style="text-align:center"><a href="//en.wikipedia.org/wiki/File:Ankyrin_R_membrane-binding_domain_1N11.png" class="image"><img alt="Ankyrin R membrane-binding domain 1N11.png" src="//upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Ankyrin_R_membrane-binding_domain_1N11.png/220px-Ankyrin_R_membrane-binding_domain_1N11.png" width="220" height="112" srcset="//upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Ankyrin_R_membrane-binding_domain_1N11.png/330px-Ankyrin_R_membrane-binding_domain_1N11.png 1.5x, //upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Ankyrin_R_membrane-binding_domain_1N11.png/440px-Ankyrin_R_membrane-binding_domain_1N11.png 2x" /></a></td>
</tr>
<tr>
<td colspan="2" style="text-align:center">Ribbon diagram of a fragment of the membrane-binding domain of <a href="//en.wikipedia.org/wiki/ANK1" title="ANK1">ankyrin R</a>.<sup id="cite_ref-pmid12456646_1-0" class="reference"><a href="#cite_note-pmid12456646-1"><span>[</span>1<span>]</span></a></sup></td>
</tr>
<tr>
<th colspan="2" scope="col" style="text-align:center; background-color: #ddd">Identifiers</th>
</tr>
<tr>
<th style="background-color: #e7dcc3">Symbol</th>
<td style="background-color: #eee">Ank</td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/Pfam" title="Pfam">Pfam</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://pfam.sanger.ac.uk/family?acc=PF00023">PF00023</a></td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/InterPro" title="InterPro">InterPro</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/interpro/entry/IPR002110">IPR002110</a></td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/Simple_Modular_Architecture_Research_Tool" title="Simple Modular Architecture Research Tool">SMART</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=SM00248">SM00248</a></td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/PROSITE" title="PROSITE">PROSITE</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://www.expasy.org/cgi-bin/prosite-search-ac?PDOC50088">PDOC50088</a></td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/Structural_Classification_of_Proteins" title="Structural Classification of Proteins" class="mw-redirect">SCOP</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?tlev=fa;&amp;pdb=1awc">1awc</a></td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/SUPERFAMILY" title="SUPERFAMILY">SUPERFAMILY</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://supfam.org/SUPERFAMILY/cgi-bin/search.cgi?search_field=1awc">1awc</a></td>
</tr>
<tr>
<td colspan="2">
<table class="collapsible collapsed" style="text-align: left; border: none; width: 100%">
<tr>
<th colspan="2" style="text-align: center; background-color: #ddd">Available protein structures:</th>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/Pfam" title="Pfam">Pfam</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://pfam.sanger.ac.uk/family/PF00023?tab=pdbBlock">structures</a></td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank">PDB</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=PfamIdQuery&amp;pfamID=PF00023">RCSB PDB</a>; <a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/pdbe-srv/PDBeXplore/pfam/?pfam=PF00023">PDBe</a></td>
</tr>
<tr>
<th style="background-color: #e7dcc3"><a href="//en.wikipedia.org/wiki/PDBsum" title="PDBsum">PDBsum</a></th>
<td style="background-color: #eee"><a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPfamStr.pl?pfam_id=PF00023">structure summary</a></td>
</tr>
</table>
</td>
</tr>
</table>
<p>The <b>ankyrin repeat</b> is a 33-residue <a href="//en.wikipedia.org/wiki/Protein_motif" title="Protein motif" class="mw-redirect">motif</a> in <a href="//en.wikipedia.org/wiki/Protein" title="Protein">proteins</a> consisting of two <a href="//en.wikipedia.org/wiki/Alpha_helix" title="Alpha helix">alpha helices</a> separated by <a href="//en.wikipedia.org/wiki/Loop_(biochemistry)" title="Loop (biochemistry)" class="mw-redirect">loops</a>, first discovered in <a href="//en.wikipedia.org/wiki/Cell_signaling" title="Cell signaling">signaling</a> proteins in <a href="//en.wikipedia.org/wiki/Yeast" title="Yeast">yeast</a> <a href="//en.wikipedia.org/w/index.php?title=Cdc10&amp;action=edit&amp;redlink=1" class="new" title="Cdc10 (page does not exist)">Cdc10</a> and <a href="//en.wikipedia.org/wiki/Drosophila" title="Drosophila">Drosophila</a> <a href="//en.wikipedia.org/wiki/Notch_pathway" title="Notch pathway" class="mw-redirect">Notch</a>. Domains consisting of ankyrin repeats mediate <a href="//en.wikipedia.org/wiki/Protein-protein_interaction" title="Protein-protein interaction" class="mw-redirect">protein-protein interactions</a> and are among the most common structural motifs in known proteins. They appear in <a href="//en.wikipedia.org/wiki/Bacteria" title="Bacteria">bacterial</a>, <a href="//en.wikipedia.org/wiki/Archaea" title="Archaea">archaeal</a>, and <a href="//en.wikipedia.org/wiki/Eukaryote" title="Eukaryote">eukaryotic</a> proteins, but are far more common in eukaryotes. Ankyrin repeat proteins, though absent in most viruses, are common among <a href="//en.wikipedia.org/wiki/Poxviruses" title="Poxviruses" class="mw-redirect">poxviruses</a>. Most proteins that contain the motif have four to six repeats, although its namesake <a href="//en.wikipedia.org/wiki/Ankyrin" title="Ankyrin">ankyrin</a> contains 24, and the largest known number of repeats is 34, predicted in a protein expressed by <a href="//en.wikipedia.org/wiki/Giardia_lamblia" title="Giardia lamblia">Giardia lamblia</a>.<sup id="cite_ref-Mosavi_2-0" class="reference"><a href="#cite_note-Mosavi-2"><span>[</span>2<span>]</span></a></sup></p>
<p>Ankyrin repeats typically <a href="//en.wikipedia.org/wiki/Protein_folding" title="Protein folding">fold</a> together to form a single, linear <a href="//en.wikipedia.org/wiki/Solenoid_protein_domain" title="Solenoid protein domain">solenoid</a> structure called <b>ankyrin repeat domains</b>. These domains are one of the most common protein–protein interaction platforms in nature. They occur in a large number of functionally diverse proteins, mainly from <a href="//en.wikipedia.org/wiki/Eukaryote" title="Eukaryote">eukaryotes</a>. The few known examples from <a href="//en.wikipedia.org/wiki/Prokaryote" title="Prokaryote">prokaryotes</a> and viruses may be the result of horizontal gene transfers.<sup id="cite_ref-pmid8108379_3-0" class="reference"><a href="#cite_note-pmid8108379-3"><span>[</span>3<span>]</span></a></sup> The repeat has been found in proteins of diverse function such as transcriptional initiators, <a href="//en.wikipedia.org/wiki/Cell_cycle" title="Cell cycle">cell cycle</a> regulators, <a href="//en.wikipedia.org/wiki/Cytoskeleton" title="Cytoskeleton">cytoskeletal</a>, <a href="//en.wikipedia.org/wiki/Ion_transporter" title="Ion transporter">ion transporters</a>, and <a href="//en.wikipedia.org/wiki/Signal_transduction" title="Signal transduction">signal transducers</a>. The ankyrin fold appears to be defined by its structure rather than its function, since there is no specific sequence or structure that is universally recognised by it.</p>
<table id="toc" class="toc">
<tr>
<td>
<div id="toctitle">
<h2>Contents</h2>
</div>
<ul>
<li class="toclevel-1 tocsection-1"><a href="#Role_in_protein_folding"><span class="tocnumber">1</span> <span class="toctext">Role in protein folding</span></a></li>
<li class="toclevel-1 tocsection-2"><a href="#Clinical_significance"><span class="tocnumber">2</span> <span class="toctext">Clinical significance</span></a>
<ul>
<li class="toclevel-2 tocsection-3"><a href="#Human_proteins_containing_this_repeat"><span class="tocnumber">2.1</span> <span class="toctext">Human proteins containing this repeat</span></a></li>
</ul>
</li>
<li class="toclevel-1 tocsection-4"><a href="#See_also"><span class="tocnumber">3</span> <span class="toctext">See also</span></a></li>
<li class="toclevel-1 tocsection-5"><a href="#References"><span class="tocnumber">4</span> <span class="toctext">References</span></a></li>
<li class="toclevel-1 tocsection-6"><a href="#External_links"><span class="tocnumber">5</span> <span class="toctext">External links</span></a></li>
</ul>
</td>
</tr>
</table>
<h2><span class="editsection">[<a href="//en.wikipedia.org/w/index.php?title=Ankyrin_repeat&amp;action=edit&amp;section=1" title="Edit section: Role in protein folding">edit</a>]</span> <span class="mw-headline" id="Role_in_protein_folding">Role in protein folding</span></h2>
<p>The ankyrin-repeat sequence motif has been studied using <a href="//en.wikipedia.org/wiki/Multiple_sequence_alignment" title="Multiple sequence alignment">multiple sequence alignment</a> to determine which <a href="//en.wikipedia.org/wiki/Conservation_(genetics)" title="Conservation (genetics)" class="mw-redirect">conserved</a> <a href="//en.wikipedia.org/wiki/Amino_acid" title="Amino acid">amino acid</a> residues are critical for folding and stability. The residues that appear on the wide lateral surface of ankyrin repeat structures are variable, often <a href="//en.wikipedia.org/wiki/Hydrophobic" title="Hydrophobic" class="mw-redirect">hydrophobic</a>, and involved mainly in mediating protein–protein interactions. An artificial <a href="//en.wikipedia.org/wiki/Protein_design" title="Protein design">protein design</a> based on a <a href="//en.wikipedia.org/wiki/Consensus_sequence" title="Consensus sequence">consensus sequence</a> derived from sequence alignment has been synthesized and found to <a href="//en.wikipedia.org/wiki/Protein_folding" title="Protein folding">fold</a> stably, representing the first designed protein with multiple identical repeats.<sup id="cite_ref-Mosavi2_4-0" class="reference"><a href="#cite_note-Mosavi2-4"><span>[</span>4<span>]</span></a></sup> More extensive design strategies have used combinatorial sequences to "evolve" ankyrin-repeat motifs that specifically recognize particular protein targets, a technique that has been presented as a possible alternative to <a href="//en.wikipedia.org/wiki/Antibody" title="Antibody">antibody</a> design for applications requiring high-affinity binding.<sup id="cite_ref-Binz_5-0" class="reference"><a href="#cite_note-Binz-5"><span>[</span>5<span>]</span></a></sup></p>
<p>Ankyrin-repeat proteins present an unusual problem in the study of <a href="//en.wikipedia.org/wiki/Protein_folding" title="Protein folding">protein folding</a>, which has largely focused on <a href="//en.wikipedia.org/wiki/Globular_protein" title="Globular protein">globular proteins</a> that form well-defined <a href="//en.wikipedia.org/wiki/Tertiary_structure" title="Tertiary structure" class="mw-redirect">tertiary structure</a> stabilized by long-range, nonlocal <a href="//en.wikipedia.org/wiki/Native_contact" title="Native contact">residue-residue contacts</a>. Ankyrin repeats, by contrast, contain very few such contacts (that is, they have a low <a href="//en.wikipedia.org/wiki/Contact_order" title="Contact order">contact order</a>). Most studies have found that ankyrin repeats fold in a <a href="//en.wikipedia.org/w/index.php?title=Two-state_folding&amp;action=edit&amp;redlink=1" class="new" title="Two-state folding (page does not exist)">two-state folding</a> mechanism, suggesting a high degree of folding cooperativity despite the local inter-residue contacts and the evident need for successful folding with varying numbers of repeats. Some evidence, based on synthesis of truncated versions of natural repeat proteins,<sup id="cite_ref-Zhang_6-0" class="reference"><a href="#cite_note-Zhang-6"><span>[</span>6<span>]</span></a></sup> and on the examination of <a href="//en.wikipedia.org/wiki/Phi_value_analysis" title="Phi value analysis">phi values</a>,<sup id="cite_ref-Tang_7-0" class="reference"><a href="#cite_note-Tang-7"><span>[</span>7<span>]</span></a></sup> suggests that the <a href="//en.wikipedia.org/wiki/C-terminus" title="C-terminus">C-terminus</a> forms the folding nucleation site.</p>
<h2><span class="editsection">[<a href="//en.wikipedia.org/w/index.php?title=Ankyrin_repeat&amp;action=edit&amp;section=2" title="Edit section: Clinical significance">edit</a>]</span> <span class="mw-headline" id="Clinical_significance">Clinical significance</span></h2>
<p>Ankyrin-repeat proteins have been associated with a number of human <a href="//en.wikipedia.org/wiki/Disease" title="Disease">diseases</a>. These proteins include the <a href="//en.wikipedia.org/wiki/Cell_cycle" title="Cell cycle">cell cycle</a> inhibitor <a href="//en.wikipedia.org/wiki/P16_(gene)" title="P16 (gene)">p16</a>, which is associated with <a href="//en.wikipedia.org/wiki/Cancer" title="Cancer">cancer</a>, and the Notch protein (a key component of cell signalling pathways) which can cause the neurological disorder <a href="//en.wikipedia.org/wiki/CADASIL" title="CADASIL" class="mw-redirect">CADASIL</a> when the repeat domain is disrupted by mutations.<sup id="cite_ref-Mosavi_2-1" class="reference"><a href="#cite_note-Mosavi-2"><span>[</span>2<span>]</span></a></sup></p>
<p>A specialized family of ankyrin proteins known as muscle ankyrin repeat proteins (MARPs) are involved with the repair and regeneration of <a href="//en.wikipedia.org/wiki/Muscle" title="Muscle">muscle</a> tissue following damage due to injury and stress.<sup id="cite_ref-Miller_8-0" class="reference"><a href="#cite_note-Miller-8"><span>[</span>8<span>]</span></a></sup></p>
<p>A natural variation between <a href="//en.wikipedia.org/wiki/Glutamine" title="Glutamine">glutamine</a> and <a href="//en.wikipedia.org/wiki/Lysine" title="Lysine">lysine</a> at position 703 in the 11th ankyrin repeat of <a href="//en.wikipedia.org/wiki/ANKK1" title="ANKK1">ANKK1</a>, known as the TaqI A1 allele,<sup id="cite_ref-9" class="reference"><a href="#cite_note-9"><span>[</span>9<span>]</span></a></sup> has been credited with encouraging addictive behaviours such as obesity, alcoholism, nicotine dependency and the Eros <a href="//en.wikipedia.org/wiki/Love_style" title="Love style" class="mw-redirect">love style</a><sup class="Template-Fact" style="white-space:nowrap;">[<a href="//en.wikipedia.org/wiki/Wikipedia:Citation_needed" title="Wikipedia:Citation needed"><span title="This claim needs references to reliable sources from August 2010">citation needed</span></a>]</sup> while discouraging juvenile delinquency and neuroticism-anxiety.<sup id="cite_ref-10" class="reference"><a href="#cite_note-10"><span>[</span>10<span>]</span></a></sup><sup class="noprint Inline-Template" style="white-space:nowrap;">[<a href="//en.wikipedia.org/wiki/Wikipedia:Verifiability" title="Wikipedia:Verifiability"><span title="The material in the vicinity of this tag failed verification of its source citation(s) from January 2012">not in citation given</span></a>]</sup> The variation may affect the specificity of protein interactions made by the ANKK1 protein kinase through this repeat<sup class="Template-Fact" style="white-space:nowrap;">[<a href="//en.wikipedia.org/wiki/Wikipedia:Citation_needed" title="Wikipedia:Citation needed"><span title="This claim needs references to reliable sources from January 2012">citation needed</span></a>]</sup>.</p>
<h3><span class="editsection">[<a href="//en.wikipedia.org/w/index.php?title=Ankyrin_repeat&amp;action=edit&amp;section=3" title="Edit section: Human proteins containing this repeat">edit</a>]</span> <span class="mw-headline" id="Human_proteins_containing_this_repeat">Human proteins containing this repeat</span></h3>
<p><a href="//en.wikipedia.org/wiki/ABTB1" title="ABTB1">ABTB1</a>; <a href="//en.wikipedia.org/w/index.php?title=ABTB2&amp;action=edit&amp;redlink=1" class="new" title="ABTB2 (page does not exist)">ABTB2</a>; <a href="//en.wikipedia.org/w/index.php?title=ACBD6&amp;action=edit&amp;redlink=1" class="new" title="ACBD6 (page does not exist)">ACBD6</a>; <a href="//en.wikipedia.org/w/index.php?title=ACTBL1&amp;action=edit&amp;redlink=1" class="new" title="ACTBL1 (page does not exist)">ACTBL1</a>; <a href="//en.wikipedia.org/wiki/ANK1" title="ANK1">ANK1</a>; <a href="//en.wikipedia.org/wiki/ANK2" title="ANK2">ANK2</a>; <a href="//en.wikipedia.org/wiki/ANK3" title="ANK3">ANK3</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKAR&amp;action=edit&amp;redlink=1" class="new" title="ANKAR (page does not exist)">ANKAR</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKDD1A&amp;action=edit&amp;redlink=1" class="new" title="ANKDD1A (page does not exist)">ANKDD1A</a>; <a href="//en.wikipedia.org/wiki/ANKFY1" title="ANKFY1">ANKFY1</a>; <a href="//en.wikipedia.org/wiki/ANKHD1" title="ANKHD1">ANKHD1</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKIB1&amp;action=edit&amp;redlink=1" class="new" title="ANKIB1 (page does not exist)">ANKIB1</a>; <a href="//en.wikipedia.org/wiki/ANKK1" title="ANKK1">ANKK1</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKMY1&amp;action=edit&amp;redlink=1" class="new" title="ANKMY1 (page does not exist)">ANKMY1</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKMY2&amp;action=edit&amp;redlink=1" class="new" title="ANKMY2 (page does not exist)">ANKMY2</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRA2&amp;action=edit&amp;redlink=1" class="new" title="ANKRA2 (page does not exist)">ANKRA2</a>; <a href="//en.wikipedia.org/wiki/ANKRD1" title="ANKRD1">ANKRD1</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD10&amp;action=edit&amp;redlink=1" class="new" title="ANKRD10 (page does not exist)">ANKRD10</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD11&amp;action=edit&amp;redlink=1" class="new" title="ANKRD11 (page does not exist)">ANKRD11</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD12&amp;action=edit&amp;redlink=1" class="new" title="ANKRD12 (page does not exist)">ANKRD12</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD13&amp;action=edit&amp;redlink=1" class="new" title="ANKRD13 (page does not exist)">ANKRD13</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD13A&amp;action=edit&amp;redlink=1" class="new" title="ANKRD13A (page does not exist)">ANKRD13A</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD13B&amp;action=edit&amp;redlink=1" class="new" title="ANKRD13B (page does not exist)">ANKRD13B</a>; <a href="//en.wikipedia.org/wiki/ANKRD13C" title="ANKRD13C">ANKRD13C</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD13D&amp;action=edit&amp;redlink=1" class="new" title="ANKRD13D (page does not exist)">ANKRD13D</a>; <a href="//en.wikipedia.org/wiki/ANKRD15" title="ANKRD15">ANKRD15</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD16&amp;action=edit&amp;redlink=1" class="new" title="ANKRD16 (page does not exist)">ANKRD16</a>; <a href="//en.wikipedia.org/wiki/ANKRD17" title="ANKRD17">ANKRD17</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD18A&amp;action=edit&amp;redlink=1" class="new" title="ANKRD18A (page does not exist)">ANKRD18A</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD18B&amp;action=edit&amp;redlink=1" class="new" title="ANKRD18B (page does not exist)">ANKRD18B</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD19&amp;action=edit&amp;redlink=1" class="new" title="ANKRD19 (page does not exist)">ANKRD19</a>; <a href="//en.wikipedia.org/wiki/ANKRD2" title="ANKRD2">ANKRD2</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD20A1&amp;action=edit&amp;redlink=1" class="new" title="ANKRD20A1 (page does not exist)">ANKRD20A1</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD20A2&amp;action=edit&amp;redlink=1" class="new" title="ANKRD20A2 (page does not exist)">ANKRD20A2</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD20A3&amp;action=edit&amp;redlink=1" class="new" title="ANKRD20A3 (page does not exist)">ANKRD20A3</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD20A4&amp;action=edit&amp;redlink=1" class="new" title="ANKRD20A4 (page does not exist)">ANKRD20A4</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD21&amp;action=edit&amp;redlink=1" class="new" title="ANKRD21 (page does not exist)">ANKRD21</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD22&amp;action=edit&amp;redlink=1" class="new" title="ANKRD22 (page does not exist)">ANKRD22</a>; <a href="//en.wikipedia.org/wiki/ANKRD23" title="ANKRD23">ANKRD23</a>; <a href="//en.wikipedia.org/wiki/ANKRD25" title="ANKRD25">ANKRD25</a>; <a href="//en.wikipedia.org/wiki/ANKRD26" title="ANKRD26">ANKRD26</a>; <a href="//en.wikipedia.org/wiki/ANKRD27" title="ANKRD27">ANKRD27</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD28&amp;action=edit&amp;redlink=1" class="new" title="ANKRD28 (page does not exist)">ANKRD28</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD30A&amp;action=edit&amp;redlink=1" class="new" title="ANKRD30A (page does not exist)">ANKRD30A</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD30B&amp;action=edit&amp;redlink=1" class="new" title="ANKRD30B (page does not exist)">ANKRD30B</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD32&amp;action=edit&amp;redlink=1" class="new" title="ANKRD32 (page does not exist)">ANKRD32</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD33&amp;action=edit&amp;redlink=1" class="new" title="ANKRD33 (page does not exist)">ANKRD33</a>; <a href="//en.wikipedia.org/wiki/ANKRD35" title="ANKRD35">ANKRD35</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD36&amp;action=edit&amp;redlink=1" class="new" title="ANKRD36 (page does not exist)">ANKRD36</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD36B&amp;action=edit&amp;redlink=1" class="new" title="ANKRD36B (page does not exist)">ANKRD36B</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD37&amp;action=edit&amp;redlink=1" class="new" title="ANKRD37 (page does not exist)">ANKRD37</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD38&amp;action=edit&amp;redlink=1" class="new" title="ANKRD38 (page does not exist)">ANKRD38</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD39&amp;action=edit&amp;redlink=1" class="new" title="ANKRD39 (page does not exist)">ANKRD39</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD40&amp;action=edit&amp;redlink=1" class="new" title="ANKRD40 (page does not exist)">ANKRD40</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD41&amp;action=edit&amp;redlink=1" class="new" title="ANKRD41 (page does not exist)">ANKRD41</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD42&amp;action=edit&amp;redlink=1" class="new" title="ANKRD42 (page does not exist)">ANKRD42</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD43&amp;action=edit&amp;redlink=1" class="new" title="ANKRD43 (page does not exist)">ANKRD43</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD44&amp;action=edit&amp;redlink=1" class="new" title="ANKRD44 (page does not exist)">ANKRD44</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD45&amp;action=edit&amp;redlink=1" class="new" title="ANKRD45 (page does not exist)">ANKRD45</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD46&amp;action=edit&amp;redlink=1" class="new" title="ANKRD46 (page does not exist)">ANKRD46</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD47&amp;action=edit&amp;redlink=1" class="new" title="ANKRD47 (page does not exist)">ANKRD47</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD49&amp;action=edit&amp;redlink=1" class="new" title="ANKRD49 (page does not exist)">ANKRD49</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD5&amp;action=edit&amp;redlink=1" class="new" title="ANKRD5 (page does not exist)">ANKRD5</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD50&amp;action=edit&amp;redlink=1" class="new" title="ANKRD50 (page does not exist)">ANKRD50</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD52&amp;action=edit&amp;redlink=1" class="new" title="ANKRD52 (page does not exist)">ANKRD52</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD53&amp;action=edit&amp;redlink=1" class="new" title="ANKRD53 (page does not exist)">ANKRD53</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD54&amp;action=edit&amp;redlink=1" class="new" title="ANKRD54 (page does not exist)">ANKRD54</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD55&amp;action=edit&amp;redlink=1" class="new" title="ANKRD55 (page does not exist)">ANKRD55</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD56&amp;action=edit&amp;redlink=1" class="new" title="ANKRD56 (page does not exist)">ANKRD56</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD57&amp;action=edit&amp;redlink=1" class="new" title="ANKRD57 (page does not exist)">ANKRD57</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD58&amp;action=edit&amp;redlink=1" class="new" title="ANKRD58 (page does not exist)">ANKRD58</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD6&amp;action=edit&amp;redlink=1" class="new" title="ANKRD6 (page does not exist)">ANKRD6</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD7&amp;action=edit&amp;redlink=1" class="new" title="ANKRD7 (page does not exist)">ANKRD7</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKRD9&amp;action=edit&amp;redlink=1" class="new" title="ANKRD9 (page does not exist)">ANKRD9</a>; <a href="//en.wikipedia.org/wiki/ANKS1A" title="ANKS1A">ANKS1A</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKS3&amp;action=edit&amp;redlink=1" class="new" title="ANKS3 (page does not exist)">ANKS3</a>; <a href="//en.wikipedia.org/wiki/ANKS4B" title="ANKS4B">ANKS4B</a>; <a href="//en.wikipedia.org/w/index.php?title=ANKS6&amp;action=edit&amp;redlink=1" class="new" title="ANKS6 (page does not exist)">ANKS6</a>; <a href="//en.wikipedia.org/wiki/ANKZF1" title="ANKZF1">ANKZF1</a>; <a href="//en.wikipedia.org/wiki/ASB1" title="ASB1">ASB1</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB10&amp;action=edit&amp;redlink=1" class="new" title="ASB10 (page does not exist)">ASB10</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB11&amp;action=edit&amp;redlink=1" class="new" title="ASB11 (page does not exist)">ASB11</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB12&amp;action=edit&amp;redlink=1" class="new" title="ASB12 (page does not exist)">ASB12</a>; <a href="//en.wikipedia.org/wiki/ASB13" title="ASB13">ASB13</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB14&amp;action=edit&amp;redlink=1" class="new" title="ASB14 (page does not exist)">ASB14</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB15&amp;action=edit&amp;redlink=1" class="new" title="ASB15 (page does not exist)">ASB15</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB16&amp;action=edit&amp;redlink=1" class="new" title="ASB16 (page does not exist)">ASB16</a>; <a href="//en.wikipedia.org/wiki/ASB2" title="ASB2">ASB2</a>; <a href="//en.wikipedia.org/wiki/ASB3" title="ASB3">ASB3</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB4&amp;action=edit&amp;redlink=1" class="new" title="ASB4 (page does not exist)">ASB4</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB5&amp;action=edit&amp;redlink=1" class="new" title="ASB5 (page does not exist)">ASB5</a>; <a href="//en.wikipedia.org/wiki/ASB6" title="ASB6">ASB6</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB7&amp;action=edit&amp;redlink=1" class="new" title="ASB7 (page does not exist)">ASB7</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB8&amp;action=edit&amp;redlink=1" class="new" title="ASB8 (page does not exist)">ASB8</a>; <a href="//en.wikipedia.org/w/index.php?title=ASB9&amp;action=edit&amp;redlink=1" class="new" title="ASB9 (page does not exist)">ASB9</a>; <a href="//en.wikipedia.org/wiki/ASZ1" title="ASZ1">ASZ1</a>; <a href="//en.wikipedia.org/wiki/BARD1" title="BARD1">BARD1</a>; <a href="//en.wikipedia.org/wiki/BAT4" title="BAT4">BAT4</a>; <a href="//en.wikipedia.org/w/index.php?title=BAT8&amp;action=edit&amp;redlink=1" class="new" title="BAT8 (page does not exist)">BAT8</a>; <a href="//en.wikipedia.org/wiki/BCL3" title="BCL3">BCL3</a>; <a href="//en.wikipedia.org/wiki/BCOR" title="BCOR">BCOR</a>; <a href="//en.wikipedia.org/w/index.php?title=BCORL1&amp;action=edit&amp;redlink=1" class="new" title="BCORL1 (page does not exist)">BCORL1</a>; <a href="//en.wikipedia.org/w/index.php?title=BTBD11&amp;action=edit&amp;redlink=1" class="new" title="BTBD11 (page does not exist)">BTBD11</a>; <a href="//en.wikipedia.org/w/index.php?title=C20orf12&amp;action=edit&amp;redlink=1" class="new" title="C20orf12 (page does not exist)">C20orf12</a>; <a href="//en.wikipedia.org/w/index.php?title=C20orf86&amp;action=edit&amp;redlink=1" class="new" title="C20orf86 (page does not exist)">C20orf86</a>; <a href="//en.wikipedia.org/w/index.php?title=C21orf99&amp;action=edit&amp;redlink=1" class="new" title="C21orf99 (page does not exist)">C21orf99</a>; <a href="//en.wikipedia.org/w/index.php?title=C7orf7&amp;action=edit&amp;redlink=1" class="new" title="C7orf7 (page does not exist)">C7orf7</a>; <a href="//en.wikipedia.org/wiki/CAMTA1" title="CAMTA1">CAMTA1</a>; <a href="//en.wikipedia.org/w/index.php?title=CAMTA2&amp;action=edit&amp;redlink=1" class="new" title="CAMTA2 (page does not exist)">CAMTA2</a>; <a href="//en.wikipedia.org/w/index.php?title=CASKIN1&amp;action=edit&amp;redlink=1" class="new" title="CASKIN1 (page does not exist)">CASKIN1</a>; <a href="//en.wikipedia.org/w/index.php?title=CASKIN2&amp;action=edit&amp;redlink=1" class="new" title="CASKIN2 (page does not exist)">CASKIN2</a>; <a href="//en.wikipedia.org/w/index.php?title=CCM1&amp;action=edit&amp;redlink=1" class="new" title="CCM1 (page does not exist)">CCM1</a>; <a href="//en.wikipedia.org/wiki/P16_(gene)" title="P16 (gene)">CDKN2A</a>; <a href="//en.wikipedia.org/wiki/CDKN2B" title="CDKN2B">CDKN2B</a>; <a href="//en.wikipedia.org/wiki/CDKN2C" title="CDKN2C">CDKN2C</a>; <a href="//en.wikipedia.org/wiki/CDKN2D" title="CDKN2D">CDKN2D</a>; <a href="//en.wikipedia.org/wiki/CENTB1" title="CENTB1">CENTB1</a>; <a href="//en.wikipedia.org/wiki/CENTB2" title="CENTB2">CENTB2</a>; <a href="//en.wikipedia.org/w/index.php?title=CENTB5&amp;action=edit&amp;redlink=1" class="new" title="CENTB5 (page does not exist)">CENTB5</a>; <a href="//en.wikipedia.org/wiki/CENTG1" title="CENTG1">CENTG1</a>; <a href="//en.wikipedia.org/wiki/CENTG2" title="CENTG2">CENTG2</a>; <a href="//en.wikipedia.org/wiki/CENTG3" title="CENTG3">CENTG3</a>; <a href="//en.wikipedia.org/w/index.php?title=CLIP3&amp;action=edit&amp;redlink=1" class="new" title="CLIP3 (page does not exist)">CLIP3</a>; <a href="//en.wikipedia.org/w/index.php?title=CLIP4&amp;action=edit&amp;redlink=1" class="new" title="CLIP4 (page does not exist)">CLIP4</a>; <a href="//en.wikipedia.org/wiki/CLPB" title="CLPB">CLPB</a>; <a href="//en.wikipedia.org/w/index.php?title=CTGLF1&amp;action=edit&amp;redlink=1" class="new" title="CTGLF1 (page does not exist)">CTGLF1</a>; <a href="//en.wikipedia.org/w/index.php?title=CTGLF2&amp;action=edit&amp;redlink=1" class="new" title="CTGLF2 (page does not exist)">CTGLF2</a>; <a href="//en.wikipedia.org/w/index.php?title=CTGLF3&amp;action=edit&amp;redlink=1" class="new" title="CTGLF3 (page does not exist)">CTGLF3</a>; <a href="//en.wikipedia.org/w/index.php?title=CTGLF4&amp;action=edit&amp;redlink=1" class="new" title="CTGLF4 (page does not exist)">CTGLF4</a>; <a href="//en.wikipedia.org/w/index.php?title=CTGLF5&amp;action=edit&amp;redlink=1" class="new" title="CTGLF5 (page does not exist)">CTGLF5</a>; <a href="//en.wikipedia.org/wiki/CTTNBP2" title="CTTNBP2">CTTNBP2</a>; <a href="//en.wikipedia.org/wiki/DAPK1" title="DAPK1">DAPK1</a>; <a href="//en.wikipedia.org/wiki/DDEF1" title="DDEF1">DDEF1</a>; <a href="//en.wikipedia.org/wiki/DDEF2" title="DDEF2">DDEF2</a>; <a href="//en.wikipedia.org/w/index.php?title=DDEFL1&amp;action=edit&amp;redlink=1" class="new" title="DDEFL1 (page does not exist)">DDEFL1</a>; <a href="//en.wikipedia.org/w/index.php?title=DGKI&amp;action=edit&amp;redlink=1" class="new" title="DGKI (page does not exist)">DGKI</a>; <a href="//en.wikipedia.org/wiki/DGKZ" title="DGKZ">DGKZ</a>; <a href="//en.wikipedia.org/w/index.php?title=DP58&amp;action=edit&amp;redlink=1" class="new" title="DP58 (page does not exist)">DP58</a>; <a href="//en.wikipedia.org/w/index.php?title=DYSFIP1&amp;action=edit&amp;redlink=1" class="new" title="DYSFIP1 (page does not exist)">DYSFIP1</a>; <a href="//en.wikipedia.org/wiki/EHMT1" title="EHMT1">EHMT1</a>; <a href="//en.wikipedia.org/wiki/EHMT2" title="EHMT2">EHMT2</a>; <a href="//en.wikipedia.org/wiki/ESPN" title="ESPN">ESPN</a>; <a href="//en.wikipedia.org/w/index.php?title=FANK1&amp;action=edit&amp;redlink=1" class="new" title="FANK1 (page does not exist)">FANK1</a>; <a href="//en.wikipedia.org/w/index.php?title=FEM1A&amp;action=edit&amp;redlink=1" class="new" title="FEM1A (page does not exist)">FEM1A</a>; <a href="//en.wikipedia.org/w/index.php?title=FEM1B&amp;action=edit&amp;redlink=1" class="new" title="FEM1B (page does not exist)">FEM1B</a>; <a href="//en.wikipedia.org/wiki/GABPB2" title="GABPB2">GABPB2</a>; <a href="//en.wikipedia.org/wiki/GIT1" title="GIT1">GIT1</a>; <a href="//en.wikipedia.org/wiki/GIT2" title="GIT2">GIT2</a>; <a href="//en.wikipedia.org/w/index.php?title=GLS_(gene)&amp;action=edit&amp;redlink=1" class="new" title="GLS (gene) (page does not exist)">GLS</a>; <a href="//en.wikipedia.org/w/index.php?title=GLS2&amp;action=edit&amp;redlink=1" class="new" title="GLS2 (page does not exist)">GLS2</a>; <a href="//en.wikipedia.org/w/index.php?title=HACE1&amp;action=edit&amp;redlink=1" class="new" title="HACE1 (page does not exist)">HACE1</a>; <a href="//en.wikipedia.org/w/index.php?title=HECTD1&amp;action=edit&amp;redlink=1" class="new" title="HECTD1 (page does not exist)">HECTD1</a>; <a href="//en.wikipedia.org/w/index.php?title=IBTK&amp;action=edit&amp;redlink=1" class="new" title="IBTK (page does not exist)">IBTK</a>; <a href="//en.wikipedia.org/wiki/ILK" title="ILK" class="mw-redirect">ILK</a>; <a href="//en.wikipedia.org/wiki/INVS" title="INVS">INVS</a>; <a href="//en.wikipedia.org/wiki/KIDINS220" title="KIDINS220">KIDINS220</a>; <a href="//en.wikipedia.org/wiki/KRIT1" title="KRIT1">KRIT1</a>; <a href="//en.wikipedia.org/w/index.php?title=LOC348840&amp;action=edit&amp;redlink=1" class="new" title="LOC348840 (page does not exist)">LOC348840</a>; <a href="//en.wikipedia.org/w/index.php?title=LOC554226&amp;action=edit&amp;redlink=1" class="new" title="LOC554226 (page does not exist)">LOC554226</a>; <a href="//en.wikipedia.org/wiki/LRRK1" title="LRRK1">LRRK1</a>; <a href="//en.wikipedia.org/w/index.php?title=MAIL&amp;action=edit&amp;redlink=1" class="new" title="MAIL (page does not exist)">MAIL</a>; <a href="//en.wikipedia.org/w/index.php?title=MGC26718&amp;action=edit&amp;redlink=1" class="new" title="MGC26718 (page does not exist)">MGC26718</a>; <a href="//en.wikipedia.org/w/index.php?title=MGC29891&amp;action=edit&amp;redlink=1" class="new" title="MGC29891 (page does not exist)">MGC29891</a>; <a href="//en.wikipedia.org/wiki/MIB1_(gene)" title="MIB1 (gene)">MIB1</a>; <a href="//en.wikipedia.org/wiki/MIB2" title="MIB2" class="mw-redirect">MIB2</a>; <a href="//en.wikipedia.org/wiki/MPHOSPH8" title="MPHOSPH8">MPHOSPH8</a>; <a href="//en.wikipedia.org/wiki/MTPN" title="MTPN">MTPN</a>; <a href="//en.wikipedia.org/w/index.php?title=MYO16&amp;action=edit&amp;redlink=1" class="new" title="MYO16 (page does not exist)">MYO16</a>; <a href="//en.wikipedia.org/wiki/NFKB1" title="NFKB1">NFKB1</a>; <a href="//en.wikipedia.org/wiki/NFKB2" title="NFKB2">NFKB2</a>; <a href="//en.wikipedia.org/wiki/NFKBIA" title="NFKBIA" class="mw-redirect">NFKBIA</a>; <a href="//en.wikipedia.org/wiki/NFKBIB" title="NFKBIB">NFKBIB</a>; <a href="//en.wikipedia.org/wiki/NFKBIE" title="NFKBIE">NFKBIE</a>; <a href="//en.wikipedia.org/wiki/NFKBIL1" title="NFKBIL1">NFKBIL1</a>; <a href="//en.wikipedia.org/w/index.php?title=NFKBIL2&amp;action=edit&amp;redlink=1" class="new" title="NFKBIL2 (page does not exist)">NFKBIL2</a>; <a href="//en.wikipedia.org/wiki/NOTCH1" title="NOTCH1" class="mw-redirect">NOTCH1</a>; <a href="//en.wikipedia.org/wiki/NOTCH2" title="NOTCH2" class="mw-redirect">NOTCH2</a>; <a href="//en.wikipedia.org/wiki/NOTCH3" title="NOTCH3" class="mw-redirect">NOTCH3</a>; <a href="//en.wikipedia.org/wiki/NOTCH4" title="NOTCH4">NOTCH4</a>; <a href="//en.wikipedia.org/w/index.php?title=NRARP&amp;action=edit&amp;redlink=1" class="new" title="NRARP (page does not exist)">NRARP</a>; <a href="//en.wikipedia.org/wiki/NUDT12" title="NUDT12">NUDT12</a>; <a href="//en.wikipedia.org/wiki/OSBPL1A" title="OSBPL1A">OSBPL1A</a>; <a href="//en.wikipedia.org/wiki/OSTF1" title="OSTF1">OSTF1</a>; <a href="//en.wikipedia.org/wiki/PLA2G6" title="PLA2G6">PLA2G6</a>; <a href="//en.wikipedia.org/w/index.php?title=POTE14&amp;action=edit&amp;redlink=1" class="new" title="POTE14 (page does not exist)">POTE14</a>; <a href="//en.wikipedia.org/w/index.php?title=POTE15&amp;action=edit&amp;redlink=1" class="new" title="POTE15 (page does not exist)">POTE15</a>; <a href="//en.wikipedia.org/w/index.php?title=POTE8&amp;action=edit&amp;redlink=1" class="new" title="POTE8 (page does not exist)">POTE8</a>; <a href="//en.wikipedia.org/wiki/PPP1R12A" title="PPP1R12A">PPP1R12A</a>; <a href="//en.wikipedia.org/wiki/PPP1R12B" title="PPP1R12B">PPP1R12B</a>; <a href="//en.wikipedia.org/w/index.php?title=PPP1R12C&amp;action=edit&amp;redlink=1" class="new" title="PPP1R12C (page does not exist)">PPP1R12C</a>; <a href="//en.wikipedia.org/wiki/PPP1R13B" title="PPP1R13B">PPP1R13B</a>; <a href="//en.wikipedia.org/wiki/PPP1R13L" title="PPP1R13L">PPP1R13L</a>; <a href="//en.wikipedia.org/w/index.php?title=PPP1R16A&amp;action=edit&amp;redlink=1" class="new" title="PPP1R16A (page does not exist)">PPP1R16A</a>; <a href="//en.wikipedia.org/w/index.php?title=PPP1R16B&amp;action=edit&amp;redlink=1" class="new" title="PPP1R16B (page does not exist)">PPP1R16B</a>; <a href="//en.wikipedia.org/wiki/PSMD10" title="PSMD10">PSMD10</a>; <a href="//en.wikipedia.org/wiki/RAI14" title="RAI14">RAI14</a>; <a href="//en.wikipedia.org/wiki/RFXANK" title="RFXANK">RFXANK</a>; <a href="//en.wikipedia.org/wiki/RIPK4" title="RIPK4">RIPK4</a>; <a href="//en.wikipedia.org/wiki/RNASEL" title="RNASEL" class="mw-redirect">RNASEL</a>; <a href="//en.wikipedia.org/wiki/SHANK1" title="SHANK1">SHANK1</a>; <a href="//en.wikipedia.org/wiki/SHANK2" title="SHANK2">SHANK2</a>; <a href="//en.wikipedia.org/wiki/SHANK3" title="SHANK3">SHANK3</a>; <a href="//en.wikipedia.org/wiki/SNCAIP" title="SNCAIP">SNCAIP</a>; <a href="//en.wikipedia.org/w/index.php?title=TA-NFKBH&amp;action=edit&amp;redlink=1" class="new" title="TA-NFKBH (page does not exist)">TA-NFKBH</a>; <a href="//en.wikipedia.org/w/index.php?title=TEX14&amp;action=edit&amp;redlink=1" class="new" title="TEX14 (page does not exist)">TEX14</a>; <a href="//en.wikipedia.org/wiki/TNKS" title="TNKS">TNKS</a>; <a href="//en.wikipedia.org/wiki/TNKS2" title="TNKS2">TNKS2</a>; <a href="//en.wikipedia.org/w/index.php?title=TNNI3K&amp;action=edit&amp;redlink=1" class="new" title="TNNI3K (page does not exist)">TNNI3K</a>; <a href="//en.wikipedia.org/wiki/TP53BP2" title="TP53BP2">TP53BP2</a>; <a href="//en.wikipedia.org/w/index.php?title=TRP7&amp;action=edit&amp;redlink=1" class="new" title="TRP7 (page does not exist)">TRP7</a>; <a href="//en.wikipedia.org/wiki/TRPA1" title="TRPA1" class="mw-redirect">TRPA1</a>; <a href="//en.wikipedia.org/wiki/TRPC3" title="TRPC3">TRPC3</a>; <a href="//en.wikipedia.org/wiki/TRPC4" title="TRPC4">TRPC4</a>; <a href="//en.wikipedia.org/wiki/TRPC5" title="TRPC5">TRPC5</a>; <a href="//en.wikipedia.org/wiki/TRPC6" title="TRPC6">TRPC6</a>; <a href="//en.wikipedia.org/wiki/TRPC7" title="TRPC7">TRPC7</a>; <a href="//en.wikipedia.org/wiki/TRPV1" title="TRPV1">TRPV1</a>; <a href="//en.wikipedia.org/wiki/TRPV2" title="TRPV2">TRPV2</a>; <a href="//en.wikipedia.org/wiki/TRPV3" title="TRPV3">TRPV3</a>; <a href="//en.wikipedia.org/wiki/TRPV4" title="TRPV4">TRPV4</a>; <a href="//en.wikipedia.org/wiki/TRPV5" title="TRPV5">TRPV5</a>; <a href="//en.wikipedia.org/wiki/TRPV6" title="TRPV6">TRPV6</a>; <a href="//en.wikipedia.org/wiki/UACA" title="UACA">UACA</a>; <a href="//en.wikipedia.org/wiki/USH1G" title="USH1G">USH1G</a>; <a href="//en.wikipedia.org/w/index.php?title=ZDHHC13&amp;action=edit&amp;redlink=1" class="new" title="ZDHHC13 (page does not exist)">ZDHHC13</a>; <a href="//en.wikipedia.org/wiki/ZDHHC17" title="ZDHHC17">ZDHHC17</a>;</p>
<h2><span class="editsection">[<a href="//en.wikipedia.org/w/index.php?title=Ankyrin_repeat&amp;action=edit&amp;section=4" title="Edit section: See also">edit</a>]</span> <span class="mw-headline" id="See_also">See also</span></h2>
<ul>
<li><a href="//en.wikipedia.org/wiki/DARPin" title="DARPin">DARPin</a> (designed ankyrin repeat protein), an engineered antibody mimetic based on the structure of ankyrin repeats</li>
</ul>
<h2><span class="editsection">[<a href="//en.wikipedia.org/w/index.php?title=Ankyrin_repeat&amp;action=edit&amp;section=5" title="Edit section: References">edit</a>]</span> <span class="mw-headline" id="References">References</span></h2>
<div class="reflist references-column-count references-column-count-2" style="-moz-column-count: 2; -webkit-column-count: 2; column-count: 2; list-style-type: decimal;">
<ol class="references">
<li id="cite_note-pmid12456646-1"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid12456646_1-0">^</a></b></span> <span class="reference-text"><a href="//en.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank">PDB</a> <a rel="nofollow" class="external text" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=1N11">1N11</a>; <span class="citation Journal">Michaely P, Tomchick DR, Machius M, Anderson RG (December 2002). <a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC136955/">"Crystal structure of a 12 ANK repeat stack from human ANK1"</a>. EMBO J. <b>21</b> (23): 6387–96. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1093%2Femboj%2Fcdf651">10.1093/emboj/cdf651</a>. <a href="//en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central">PMC</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC136955">136955</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/12456646">12456646</a><span class="printonly">. //www.ncbi.nlm.nih.gov/pmc/articles/PMC136955/</span>.</span></span></li>
<li id="cite_note-Mosavi-2"><span class="mw-cite-backlink">^ <a href="#cite_ref-Mosavi_2-0"><sup><b>a</b></sup></a> <a href="#cite_ref-Mosavi_2-1"><sup><b>b</b></sup></a></span> <span class="reference-text"><span class="citation Journal">Mosavi L, Cammett T, Desrosiers D, Peng Z (2004). <a rel="nofollow" class="external text" href="http://www.proteinscience.org/cgi/content/full/13/6/1435">"The ankyrin repeat as molecular architecture for protein recognition"</a>. Protein Sci <b>13</b> (6): 1435–48. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1110%2Fps.03554604">10.1110/ps.03554604</a>. <a href="//en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central">PMC</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC2279977">2279977</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/15152081">15152081</a><span class="printonly">. <a rel="nofollow" class="external free" href="http://www.proteinscience.org/cgi/content/full/13/6/1435">http://www.proteinscience.org/cgi/content/full/13/6/1435</a></span>.</span></span></li>
<li id="cite_note-pmid8108379-3"><span class="mw-cite-backlink"><b><a href="#cite_ref-pmid8108379_3-0">^</a></b></span> <span class="reference-text"><span class="citation Journal">Bork P (December 1993). "Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally?". Proteins <b>17</b> (4): 363–74. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1002%2Fprot.340170405">10.1002/prot.340170405</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/8108379">8108379</a>.</span></span></li>
<li id="cite_note-Mosavi2-4"><span class="mw-cite-backlink"><b><a href="#cite_ref-Mosavi2_4-0">^</a></b></span> <span class="reference-text"><span class="citation Journal">Mosavi LK, Minor DL, Peng ZY (Dec 2002). <a rel="nofollow" class="external text" href="http://www.pnas.org/cgi/content/full/99/25/16029">"Consensus-derived structural determinants of the ankyrin repeat motif"</a>. Proc Natl Acad Sci USA. <b>99</b> (25): 16029–34. <a href="//en.wikipedia.org/wiki/Bibcode" title="Bibcode">Bibcode</a> <a rel="nofollow" class="external text" href="http://adsabs.harvard.edu/abs/2002PNAS...9916029M">2002PNAS...9916029M</a>. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1073%2Fpnas.252537899">10.1073/pnas.252537899</a>. <a href="//en.wikipedia.org/wiki/PubMed_Central" title="PubMed Central">PMC</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC138559">138559</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/12461176">12461176</a><span class="printonly">. <a rel="nofollow" class="external free" href="http://www.pnas.org/cgi/content/full/99/25/16029">http://www.pnas.org/cgi/content/full/99/25/16029</a></span>.</span></span></li>
<li id="cite_note-Binz-5"><span class="mw-cite-backlink"><b><a href="#cite_ref-Binz_5-0">^</a></b></span> <span class="reference-text"><span class="citation Journal">Binz HK, Amstutz P, Kohl A, et al. (May 2004). "High-affinity binders selected from designed ankyrin repeat protein libraries". Nat Biotechnol. <b>22</b> (5): 575–82. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1038%2Fnbt962">10.1038/nbt962</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/15097997">15097997</a>.</span></span></li>
<li id="cite_note-Zhang-6"><span class="mw-cite-backlink"><b><a href="#cite_ref-Zhang_6-0">^</a></b></span> <span class="reference-text"><span class="citation Journal">Zhang B, Peng Z (Jun 2000). "A minimum folding unit in the ankyrin repeat protein p16(INK4)". J Mol Biol. <b>299</b> (4): 1121–32. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1006%2Fjmbi.2000.3803">10.1006/jmbi.2000.3803</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/10843863">10843863</a>.</span></span></li>
<li id="cite_note-Tang-7"><span class="mw-cite-backlink"><b><a href="#cite_ref-Tang_7-0">^</a></b></span> <span class="reference-text"><span class="citation Journal">Tang KS, Fersht AR, Itzhaki LS (Jan 2003). <a rel="nofollow" class="external text" href="http://linkinghub.elsevier.com/retrieve/pii/S0969212602009292">"Sequential unfolding of ankyrin repeats in tumor suppressor p16"</a>. Structure <b>11</b> (1): 67–73. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1016%2FS0969-2126%2802%2900929-2">10.1016/S0969-2126(02)00929-2</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/12517341">12517341</a><span class="printonly">. <a rel="nofollow" class="external free" href="http://linkinghub.elsevier.com/retrieve/pii/S0969212602009292">http://linkinghub.elsevier.com/retrieve/pii/S0969212602009292</a></span>.</span></span></li>
<li id="cite_note-Miller-8"><span class="mw-cite-backlink"><b><a href="#cite_ref-Miller_8-0">^</a></b></span> <span class="reference-text"><span class="citation Journal">Miller MK, Bang ML, Witt CC, et al. (Nov 2003). <a rel="nofollow" class="external text" href="http://linkinghub.elsevier.com/retrieve/pii/S0022283603011380">"The muscle ankyrin repeat proteins: CARP, ankrd2/Arpp and DARP as a family of titin filament-based stress response molecules"</a>. J Mol Biol. <b>333</b> (5): 951–64. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1016%2Fj.jmb.2003.09.012">10.1016/j.jmb.2003.09.012</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/14583192">14583192</a><span class="printonly">. <a rel="nofollow" class="external free" href="http://linkinghub.elsevier.com/retrieve/pii/S0022283603011380">http://linkinghub.elsevier.com/retrieve/pii/S0022283603011380</a></span>.</span></span></li>
<li id="cite_note-9"><span class="mw-cite-backlink"><b><a href="#cite_ref-9">^</a></b></span> <span class="reference-text"><span class="citation Journal">Neville MJ, Johnstone EC, Walton RT (Jun 2004). "Identification and characterization of ANKK1: a novel kinase gene closely linked to DRD2 on chromosome band 11q23.1". Hum Mutat. <b>23</b> (6): 540–5. <a href="//en.wikipedia.org/wiki/Digital_object_identifier" title="Digital object identifier">doi</a>:<a rel="nofollow" class="external text" href="http://dx.doi.org/10.1002%2Fhumu.20039">10.1002/humu.20039</a>. <a href="//en.wikipedia.org/wiki/PubMed_Identifier" title="PubMed Identifier" class="mw-redirect">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/15146457">15146457</a>.</span></span></li>
<li id="cite_note-10"><span class="mw-cite-backlink"><b><a href="#cite_ref-10">^</a></b></span> <span class="reference-text"><span class="citation web"><a rel="nofollow" class="external text" href="http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&amp;Cmd=ShowDetailView&amp;TermToSearch=1813&amp;ordinalpos=2&amp;itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum">"NCBI Gene summary for DRD2"</a><span class="printonly">. <a rel="nofollow" class="external free" href="http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&amp;Cmd=ShowDetailView&amp;TermToSearch=1813&amp;ordinalpos=2&amp;itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum">http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&amp;Cmd=ShowDetailView&amp;TermToSearch=1813&amp;ordinalpos=2&amp;itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum</a></span>.</span> (interim reference)</span></li>
</ol>
</div>
<h2><span class="editsection">[<a href="//en.wikipedia.org/w/index.php?title=Ankyrin_repeat&amp;action=edit&amp;section=6" title="Edit section: External links">edit</a>]</span> <span class="mw-headline" id="External_links">External links</span></h2>
<ul>
<li><a href="//en.wikipedia.org/wiki/Eukaryotic_Linear_Motif_resource" title="Eukaryotic Linear Motif resource">Eukaryotic Linear Motif resource</a> motif class <a rel="nofollow" class="external text" href="http://elm.eu.org/elms/elmPages/LIG_TNKBM.html">LIG_TNKBM</a></li>
<li><a rel="nofollow" class="external text" href="http://www.nlm.nih.gov/cgi/mesh/2011/MB_cgi?mode=&amp;term=Ankyrin+repeat">Ankyrin repeat</a> at the US National Library of Medicine <a href="//en.wikipedia.org/wiki/Medical_Subject_Headings" title="Medical Subject Headings">Medical Subject Headings</a> (MeSH)</li>
</ul>
<p>This article incorporates text from the <a href="//en.wikipedia.org/wiki/Public_domain" title="Public domain">public domain</a> <a href="//en.wikipedia.org/wiki/Pfam" title="Pfam">Pfam</a> and <a href="//en.wikipedia.org/wiki/InterPro" title="InterPro">InterPro</a> <a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/interpro/IEntry?ac=IPR002110">IPR002110</a></p>






              </div>
              <p id="wpLicense">
                This page is based on a 
                <a class="ext" href="http://en.wikipedia.org/w/index.php?title=Ankyrin_repeat">
                  Wikipedia article</a>. The text is available under the 
                <a class="ext" href="http://creativecommons.org/licenses/by-sa/3.0/">
                  Creative Commons Attribution/Share-Alike License</a>.
              </p>
            </div>
          
        
        <!-- ============================================================== -->

        <div id="pfamContent" class="pfamData">

          <p>
                          This tab holds the annotation information that is stored in the Pfam
              database. As we move to using Wikipedia as our main source of annotation,
              the contents of this tab will be gradually replaced by the Wikipedia
              tab.
                      </p>
          <div id="siph"
               class="pdbImageFragment"
               style="display: none">&nbsp;</div>

          <h1>
            Ankyrin repeat
            <a id="addAnnotationButton" 
               class="btn go" 
               href="http://pfam.sanger.ac.uk/annotate?acc=PF00023">
              <span class="btn-inner">Provide feedback</span></a>
          </h1>

          <p>Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity [<a href="#ref2">2</a>].</p>
        
            <h2>Literature references</h2>
        
            <ol>
            
              <li>
                <p>
                  Lux SE, John KM, Bennett V; , Nature 1990;345:736-739.: Hereditary spherocytosis associated with deletion of human erythrocyte ankyrin gene on chromosome 8. 
                  <a name="ref1"
                     class="ext" 
                     href="http://www.ncbi.nlm.nih.gov/pubmed/2141669">
                    PUBMED:2141669</a>
                  <a name="epmc1"
                     class="ext" 
                     href="http://europepmc.org/abstract/MED/2141669">
                    EPMC:2141669</a>
                </p>
              </li>
              <li>
                <p>
                  Michaely P, Tomchick DR, Machius M, Anderson RG;, EMBO J. 2002;21:6387-6396.: Crystal structure of a 12 ANK repeat stack from human ankyrinR.
                  <a name="ref2"
                     class="ext" 
                     href="http://www.ncbi.nlm.nih.gov/pubmed/12456646">
                    PUBMED:12456646</a>
                  <a name="epmc2"
                     class="ext" 
                     href="http://europepmc.org/abstract/MED/12456646">
                    EPMC:12456646</a>
                </p>
              </li>
              <li>
                <p>
                  Michaely P, Bennett V;, Trends Cell Biol. 1992;2:127-129.: The ANK repeat: a ubiquitous motif involved in macromolecular recognition.
                  <a name="ref3"
                     class="ext" 
                     href="http://www.ncbi.nlm.nih.gov/pubmed/14731966">
                    PUBMED:14731966</a>
                  <a name="epmc3"
                     class="ext" 
                     href="http://europepmc.org/abstract/MED/14731966">
                    EPMC:14731966</a>
                </p>
              </li>
            </ol>
        
            <hr class="short"/>
          

              <h2 class="padded">External database links</h2>
    <table class="details links" summary="External database links">
      <tbody>
                <tr class="even">
          <td class="label">HOMSTRAD:           </td>
          <td>                  <span class="entry"><a class="ext" href="http://tardis.nibio.go.jp/cgi-bin/homstrad/homstrad.cgi?family=ANK">ANK</a>                  </span></td>
        </tr>        <tr class="odd">
          <td class="label">MIM:           </td>
          <td>                  <span class="entry"><a class="ext" href="http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=182900">182900</a>                  </span></td>
        </tr>        <tr class="even">
          <td class="label">PANDIT:           </td>
          <td><a class="ext" href="http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&amp;fam=PF00023">PF00023</a>          </td>
        </tr>        <tr class="odd">
          <td class="label">Pseudofam:           </td>
          <td><a class="ext" href="http://pseudofam.pseudogene.org/pages/psfam/showFams.jsf?genome=0&amp;format=family&amp;id=PF00023">PF00023</a>          </td>
        </tr>        <tr class="even">
          <td class="label">SCOP:           </td>
          <td>                  <span class="entry"><a class="ext" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?tlev=fa&amp;pdb=1awc">1awc</a>                  </span></td>
        </tr>        <tr class="odd">
          <td class="label">SYSTERS:           </td>
          <td><a class="ext" href="http://systers.molgen.mpg.de/cgi-bin/nph-fetchcluster.pl?PFAM=Ank">Ank</a>          </td>
        </tr>
      </tbody>
    </table>
        </div> 

        <!-- ============================================================== -->

        <div class="interproData">

          <p>
            This tab holds annotation information from the 
            <a class="ext" href="http://www.ebi.ac.uk/interpro/">InterPro</a> database.
          </p>

            <h1 id="interproTitle">
              InterPro entry 
              <a class="ext" href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002110">IPR002110</a>
            </h1>
            
<p> The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers [<a class="ext" href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;dopt=Abstract&amp;amp;list_uids=8108379">PUBMED:8108379</a>]. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. </p>
<p>The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [<a class="ext" href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;dopt=Abstract&amp;amp;list_uids=8875926">PUBMED:8875926</a>, <a class="ext" href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;dopt=Abstract&amp;amp;list_uids=9353127">PUBMED:9353127</a>, <a class="ext" href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;dopt=Abstract&amp;amp;list_uids=9461436">PUBMED:9461436</a>, <a class="ext" href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;dopt=Abstract&amp;amp;list_uids=9865693">PUBMED:9865693</a>]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90<sup>o</sup> angle. The repeats stack together to form an L-shaped structure [<a class="ext" href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;dopt=Abstract&amp;amp;list_uids=8875926">PUBMED:8875926</a>, <a class="ext" href="http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;dopt=Abstract&amp;amp;list_uids=12461176">PUBMED:12461176</a>].</p>

              <h3>Gene Ontology</h3>

              <p>
                The mapping between Pfam and Gene Ontology is provided by InterPro.
                If you use this data please 
                <a class="ext" href="http://www.ebi.ac.uk/interpro/references.html">cite</a> InterPro.
              </p>

                            
              <table class="details links" summary="Gene ontology data">
                <tbody>
                                  <tr class="even">
                                          <td class="label" rowspan="1">
                        Molecular function
                      </td>
                                        <td>
                      <a href="http://www.ebi.ac.uk/ego/DisplayGoTerm?id=GO:0005515">
                        protein binding</a>
                      (<a href="http://www.ebi.ac.uk/ego/DisplayGoTerm?id=GO:0005515">GO:0005515</a>)
                    </td>
                  </tr>
                                  </tbody>
              </table>
              
        </div>

        <!-- ============================================================== -->

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    <h1>Domain organisation</h1> 
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    <p>
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      this domain is found.
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          This example describes an architecture with one <code>Gla</code>
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        </li>
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        Note that you can see the family page for a particular domain by 
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      </p>
    </div>

    <div id="dgph">
      <p class="loading">
        Loading domain graphics...
      </p>
    </div>
  </div>

  <script type="text/javascript">
    // <![CDATA[

    Event.observe( window, "load", function() {
      var r = new Ajax.Updater(
        "dgph",
        "http://pfam.sanger.ac.uk/domaingraphics/PF00023",
        {
          method:      'get',
          evalScripts: true,
          onFailure:   function() {
            $("dgph").update( "Domain graphics loading failed." );
          }
        }
      );
    } );

    // ]]>
  </script>

</div>
<!-- end domain architectures block -->

<!-- start clan block -->

<div class="block" id="clanBlock">
  <div class="handle">
    <h1>Pfam Clan</h1>
  </div>
  <div class="blockContent">

    <p>
      This family is a member of clan <strong>
      <a href="http://pfam.sanger.ac.uk/clan/Ank">Ank</a></strong>
      (<a href="http://pfam.sanger.ac.uk/clan/CL0465">CL0465</a>),
      which contains the following 7 members:
    </p>
  
    
        <span class="listItem">
        Ank
        </span>
        
        <span class="listItem">
        
          <a title="PF12796"
             href="http://pfam.sanger.ac.uk/family/PF12796">
            Ank_2</a>
        
        </span>
        
        <span class="listItem">
        
          <a title="PF13606"
             href="http://pfam.sanger.ac.uk/family/PF13606">
            Ank_3</a>
        
        </span>
        
        <span class="listItem">
        
          <a title="PF13637"
             href="http://pfam.sanger.ac.uk/family/PF13637">
            Ank_4</a>
        
        </span>
        
        <span class="listItem">
        
          <a title="PF13857"
             href="http://pfam.sanger.ac.uk/family/PF13857">
            Ank_5</a>
        
        </span>
        
        <span class="listItem">
        
          <a title="PF11900"
             href="http://pfam.sanger.ac.uk/family/PF11900">
            DUF3420</a>
        
        </span>
        
        <span class="listItem">
        
          <a title="PF11929"
             href="http://pfam.sanger.ac.uk/family/PF11929">
            DUF3447</a>
        
        </span>
        
  
    <div class="cleaner"><!-- empty --></div>

  </div>

</div>

<!-- end clan block -->


<!-- start align block -->

<div class="block" id="alignBlock">
  <div class="handle">
    <h1>Alignments</h1>
  </div>
  <div class="blockContent">
    <p>
      We store a range of different sequence alignments for families. As well
      as the seed alignment from which the family is built, we provide the 
      full alignment, generated by searching the sequence database using the
      family HMM. We also generate alignments using four
      <a class="ext" href="http://pir.georgetown.edu/rps/">
        representative proteomes</a> (RP) sets, the NCBI sequence database,
      and our metagenomics sequence database.
      <span onclick="reveal( this, 'alignmentsNotes', false, true );"
            id="alignmentNotesSwitch"
            class="moreLink">
        More...</span>
    </p>
    <div id="alignmentsNotes" style="display: none">
      <p>
        There are various ways to view or download the sequence alignments that
        we store. We provide several sequence viewers and a plain-text
        Stockholm-format file for download.
      </p>

      <h3>Alignment types</h3>

      <p>
        We make a range of alignments for each Pfam-A family:
      </p>

      <dl>
        <dt>seed</dt>
        <dd>the curated alignment from which the HMM for the family is
          built</dd>
        <dt>full</dt>
        <dd>the alignment generated by searching the sequence database 
          using the HMM</dd>
        <dt>RP15/RP35/RP55/RP75</dt>
        <dd><a class="ext" href="http://pir.georgetown.edu/rps/">
          Representative Proteomes (RPs)</a> at
          15%, 35%, 55% and 75% co-membership thresholds</dd>
        <dt>NCBI</dt>
        <dd>alignment generated by searching the NCBI sequence database
          using the family HMM</dd>
        <dt>meta</dt>
        <dd>alignment generated by searching the metagenomics sequence database
          using the family HMM</dd>
      </dl>

      <h3>Viewing</h3>

      <p>
        You can see the alignments as HTML or in three different sequence
        viewers:
      </p>
      <dl>
        <dt>
          <a class="ext" href="http://www.jalview.org/">jalview</a>
        </dt>
        <dd>
          a Java applet developed at the University of Dundee. You will
          need <a class="ext" href="http://java.sun.com/">Java</a> installed
          before running jalview
        </dd>
        <dt>
          HTML
        </dt>
        <dd>
          an HTML page showing the whole alignment.<strong>Please
          note:</strong> full Pfam alignments can be <em>very</em> large. These
          HTML views are extremely large and often cause problems for browsers.
          Please use either jalview or the Pfam viewer if you have trouble
          viewing the HTML version
        </dd>
        <dt>
          PP/Heatmap
        </dt>
        <dd>
          an HTML-based representation of the alignment, coloured according to 
          the posterior-probability (PP) values from the HMM. As for the standard HTML
          view, heatmap alignments can also be very large and slow to render.
        </dd>
        <dt>
          Pfam viewer
        </dt>
        <dd>
          an HTML-based viewer that uses 
          <acronym title="Distributed Annotation System">DAS</acronym> 
          to retrieve alignment fragments on request
        </dd>
      </dl>

      <h3>Reformatting</h3>

      <p>
        You can download (or view in your browser) a text representation of a
        Pfam alignment in various formats:
      </p>
      <ul>
        <li>Selex</li>
        <li>Stockholm</li>
        <li>FASTA</li>
        <li>MSF</li>
      </ul>
      <p>
        You can also change the order in which sequences are listed in the 
        alignment, change how insertions are represented, alter the characters
        that are used to represent gaps in sequences and, finally, choose 
        whether to download the alignment or to view it in your browser 
        directly.
      </p>

      <h3>Downloading</h3>

      <p>
        You may find that large alignments cause problems for the viewers and
        the reformatting tool, so we also provide all alignments in Stockholm
        format. You can download either the plain text alignment, or a gzipped
        version of it.
      </p>
      <hr />
    </div>



    <h2>View options</h2>

    <p>
      We make a range of alignments for each Pfam-A family. You can see a
      description of each 
      <span onclick="reveal( this, 'alignmentsNotes', false, true );$('alignmentNotesSwitch').update('Less...');"
            class="moreLink">above</span>. 
      You can view these alignments in various ways but please note that some
      types of alignment are never generated while others may not be available
      for all families, most commonly because the alignments are too large to
      handle.
    </p>

    <table id="viewAlignOpts"
           class="details"
           summary="Alignment display options">
      <thead>
        <tr>
          <th class="corner" rowspan="2">&nbsp;</th>
          <th rowspan="2">Seed<br /><small>(1072)</small></th>
          <th rowspan="2">Full<br /><small>(8812)</small></th>
          <th colspan="4">Representative proteomes</th>
          <th rowspan="2">NCBI<br /><small>(139773)</small></th>
          <th rowspan="2">Meta<br /><small>(9187)</small></th>
        </tr>
        <tr>
          <th>RP15<br /><small>(2564)</small></th>
          <th>RP35<br /><small>(3256)</small></th>
          <th>RP55<br /><small>(4303)</small></th>
          <th>RP75<br /><small>(5230)</small></th>
        </tr>
      </thead>
      <tbody>
          <tr class="odd">
            <td class="label">Jalview</td>
                  
                  <td id="jalview_seed" 
                      class="available">
                    <span class="link" rel="1072" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="jalview_full" 
                      class="available">
                    <span class="link" rel="8812" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="jalview_rp15" 
                      class="available">
                    <span class="link" rel="2564" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="jalview_rp35" 
                      class="available">
                    <span class="link" rel="3256" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="jalview_rp55" 
                      class="available">
                    <span class="link" rel="4303" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="jalview_rp75" 
                      class="available">
                    <span class="link" rel="5230" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="jalview_ncbi" 
                      class="available">
                    <span class="link" rel="139773" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="jalview_meta" 
                      class="available">
                    <span class="link" rel="9187" style="display: none !important">View</span>&nbsp;
                  </td>
          </tr>
          <tr class="even">
            <td class="label">HTML</td>
                  
                  <td id="html_seed" 
                      class="available">
                    <span class="link" rel="1072" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td class="unavailable toolarge">&nbsp;
                  </td>
                  
                  <td id="html_rp15" 
                      class="available">
                    <span class="link" rel="2564" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="html_rp35" 
                      class="available">
                    <span class="link" rel="3256" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="html_rp55" 
                      class="available">
                    <span class="link" rel="4303" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td class="unavailable toolarge">&nbsp;
                  </td>
                
                <td class="notgenerated">&nbsp;
                </td>
              
                
                <td class="notgenerated">&nbsp;
                </td>
              
          </tr>
          <tr class="odd">
            <td class="label">PP/heatmap</td>
                
                <td class="notgenerated">
                    <span class="fn"><sub>1</sub></span>
                </td>
              
                  
                  <td class="unavailable toolarge">&nbsp;
                  </td>
                  
                  <td id="heatmap_rp15" 
                      class="available">
                    <span class="link" rel="2564" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="heatmap_rp35" 
                      class="available">
                    <span class="link" rel="3256" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="heatmap_rp55" 
                      class="available">
                    <span class="link" rel="4303" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td class="unavailable toolarge">&nbsp;
                  </td>
                
                <td class="notgenerated">&nbsp;
                </td>
              
                
                <td class="notgenerated">&nbsp;
                </td>
              
          </tr>
          <tr class="even">
            <td class="label">Pfam viewer</td>
                  
                  <td id="viewer_seed" 
                      class="available">
                    <span class="link" rel="1072" style="display: none !important">View</span>&nbsp;
                  </td>
                  
                  <td id="viewer_full" 
                      class="available">
                    <span class="link" rel="8812" style="display: none !important">View</span>&nbsp;
                  </td>
                
                <td class="notgenerated">&nbsp;
                </td>
              
                
                <td class="notgenerated">&nbsp;
                </td>
              
                
                <td class="notgenerated">&nbsp;
                </td>
              
                
                <td class="notgenerated">&nbsp;
                </td>
              
                
                <td class="notgenerated">&nbsp;
                </td>
              
                
                <td class="notgenerated">&nbsp;
                </td>
              
          </tr>
      </tbody>
    </table>

    
      <p class="viewAlignOptsFootnote">
        <small><sup>1</sup>Cannot generate PP/Heatmap alignments for seeds; no PP data available</small>
      </p>
      
    
    <p id="viewAlignOptsKey">
      <strong>Key:</strong>
      <img src="http://pfam.sanger.ac.uk/static/images/tick_18.png" alt="&#10003;" /> available,
      <img src="http://pfam.sanger.ac.uk/static/images/cross_18.png" alt="x" /> not generated,
      <strong>&mdash;</strong> not available.
    </p>

    <script type="text/javascript">
      // <![CDATA[

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        var alignmentSizes = {
          full: 8812,
          meta: 9187,
          ncbi: 139773,
          rp15: 2564,
          rp35: 3256,
          rp55: 4303,
          rp75: 5230,
          seed: 1072
        };

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            var viewerAndType = target.id.split("_");
            var viewer = viewerAndType[0],
                type   = viewerAndType[1];

            if ( viewer == "jalview" ) {
              var url = "http://pfam.sanger.ac.uk/family/PF00023/alignment/" + type + "/jalview";
              popUp( url, 'console', 800, 800, 'jalviewWin');
          
            } else if ( viewer == "viewer" ) {
              var url = "http://pfam.sanger.ac.uk/family/PF00023/alignment/" + type + "/dasviewer";
              popUp( url, 'console', 800, 800, 'viewerWin');
          
            } else {
              var cont = true;
              if ( alignmentSizes[type] > 1000 ) {
                cont = confirm("This alignment contains a large number of sequences, " +
                               "which can cause problems for browsers. \nAre you " +
                               "sure that you want to try to view it as HTML ?" );
              }
              if ( cont ) {
                url = "http://pfam.sanger.ac.uk/family/PF00023/alignment/" + type + "/" + viewer;
                popUp( url, 'console', 800, 800, 'viewerWin');
              }
            }      
            return false;
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      } );

      // ]]>
    </script>

    <h2>Format an alignment</h2>
    <form action="http://pfam.sanger.ac.uk/family/alignment/download/format" 
          id="formatForm">
      <div>
        <input type="hidden" name="acc" value="PF00023" />

        
        <table class="details alignOpts" 
               id="formatAlignOpts"
               summary="Alignment formatting options">
          <thead>
            <tr>
              <th class="corner" rowspan="2">&nbsp;</th>
              <th rowspan="2">Seed<br /><small>(1072)</small></th>
              <th rowspan="2">Full<br /><small>(8812)</small></th>
              <th colspan="4">Representative proteomes</th>
              <th rowspan="2">NCBI<br /><small>(139773)</small></th>
              <th rowspan="2">Meta<br /><small>(9187)</small></th>
            </tr>
            <tr>
              <th>RP15<br /><small>(2564)</small></th>
              <th>RP35<br /><small>(3256)</small></th>
              <th>RP55<br /><small>(4303)</small></th>
              <th>RP75<br /><small>(5230)</small></th>
            </tr>
          </thead>
          <tbody>
            <tr class="even">
              <td class="label">Alignment:</td>
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="seed"
                         checked='checked'
                          />
                </td>
              
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="full"
                         
                          />
                </td>
              
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="rp15"
                         
                          />
                </td>
              
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="rp35"
                         
                          />
                </td>
              
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="rp55"
                         
                          />
                </td>
              
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="rp75"
                         
                          />
                </td>
              
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="ncbi"
                         
                          />
                </td>
              
                <td class="radio available">
                  <input type="radio"
                         name="alnType"
                         value="meta"
                         
                          />
                </td>
              
            </tr>
            <tr class="odd">
              <td class="label">Format:</td>
              <td colspan="8">
                <span class="button">
                  <select name="format" id="format">
                    <option value="pfam" selected="selected">Selex</option>
                    <option value="stockholm">Stockholm</option>
                    <option value="fasta">FASTA</option>
                    <option value="msf">MSF</option>
                  </select>
                </span>
      	      </td>
            </tr>
            <tr class="even">
              <td class="label">Order:</td>
              <td colspan="8">
                <span class="button">
                  <input type="radio" name="order" id="orderT" value="t" checked="checked" />
                  <label for="orderT">Tree</label>
                </span>
                <span class="button">
                  <input type="radio" name="order" id="orderA" value="a" />
                  <label for="orderA">Alphabetical</label>
                </span>
      	      </td>
            </tr>
            <tr class="odd">
              <td class="label">Sequence:</td>
              <td colspan="8">
                <span class="button">
                  <input type="radio" name="case" id="caseL" value="l" checked="checked" />
                  <label for="caseL">Inserts lower case</label>
                </span>
          			<span class="button">
                  <input type="radio" name="case" id="caseU" value="u" />
                  <label for="caseU">All upper case</label>
                </span>
      	      </td>
            </tr>
            <tr class="even">
              <td class="label">Gaps:</td>
              <td colspan="8">
                <span class="button">
                  <select name="gaps" id="gaps">
                    <option value="default" selected="selected">Gaps as "." or "-" (mixed)</option>
                    <option value="dots">Gaps as "." (dots)</option>
                    <option value="dashes">Gaps as "-" (dashes)</option>
                    <option value="none">No gaps (unaligned)</option>
                  </select>
                </span>
      	      </td>
            </tr>
            <tr class="odd">
              <td class="label">Download/view:</td>
              <td colspan="8">
                <span class="button">
                  <input type="radio" name="download" id="downloadD" value="1" checked="checked" />
                  <label for="downloadD">Download</label>
                </span>
                <span class="button">
                  <input type="radio" name="download" id="downloadV" value="0" />
                  <label for="downloadV">View</label>
                </span>
      	      </td>
            </tr>
          </tbody>
        </table>    
    
        <input type="submit" value="Generate" />
    
      </div>
    </form>

    <h2>Download options</h2>

    <p>
      We make all of our alignments available in Stockholm format.
      You can download them here as raw, plain text files or as
      <a class="ext" href="http://www.gzip.org/">gzip</a>-compressed files.       
    </p>

    <table id="dlAlignOpts"
           class="details"
           summary="Alignment download options">
      <thead>
        <tr>
          <th class="corner" rowspan="2">&nbsp;</th>
          <th rowspan="2">Seed<br /><small>(1072)</small></th>
          <th rowspan="2">Full<br /><small>(8812)</small></th>
          <th colspan="4">Representative proteomes</th>
          <th rowspan="2">NCBI<br /><small>(139773)</small></th>
          <th rowspan="2">Meta<br /><small>(9187)</small></th>
        </tr>
        <tr>
          <th>RP15<br /><small>(2564)</small></th>
          <th>RP35<br /><small>(3256)</small></th>
          <th>RP55<br /><small>(4303)</small></th>
          <th>RP75<br /><small>(5230)</small></th>
        </tr>
      </thead>
      <tbody>
        <tr class="odd">
          <td class="label">Raw Stockholm</td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/seed" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/full" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp15" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp35" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp55" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp75" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/ncbi" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/meta" style="display: none">Download</a>
                &nbsp;
              </td>
        </tr>
        <tr class="even">
          <td class="label">Gzipped</td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/seed/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/full/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp15/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp35/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp55/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/rp75/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/ncbi/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
              <td class="available">
                <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/meta/gzipped" style="display: none">Download</a>
                &nbsp;
              </td>
        </tr>
      </tbody>
    </table>

    <p>
      You can also 
      <a href="http://pfam.sanger.ac.uk/family/PF00023/alignment/long/gzipped">
        download</a> a FASTA format file containing the 
      <strong>full-length sequences</strong> for all sequences in the full alignment.
    </p>

    <script type="text/javascript">
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            target.removeClassName("empty")
                  .down("a").hide();
          } );
        } );

      } );

      // ]]>
    </script>

    <h2>External links</h2>

    <p>
      <a class="ext" href="http://myhits.vital-it.ch/">MyHits</a> provides a 
      collection of tools to handle multiple sequence alignments. For example, 
      one can refine a seed alignment (sequence addition or removal, 
      re-alignment or manual edition) and then search databases for remote 
      homologs using HMMER3. 
    </p>

    <form id="myHitsForm"
          action="http://myhits.vital-it.ch/cgi-bin/msa_hub"
          method="post">
      <div>
        <input type="hidden" name="text" id="myHitsText" />
        <input type="hidden" name="action" value="to MSA hub" />
  
        
        <table class="details alignOpts" summary="Download options">
          <tbody>
            <tr class="even">
              <td class="label">Pfam alignments:</td>
              <td>
                <span class="button">
                  <input type="radio" name="alnType" id="mhTypeS" value="seed" checked="checked" />
                  <label for="mhTypeS">Seed (1072)</label>
                </span>
                <span class="button">
                  <input type="radio" name="alnType" id="mhTypeF" value="full" />
                  <label for="mhTypeF">Full (8812)</label>
                </span>
              </td>
            </tr>
          </tbody>
        </table>
  
        <input type="button" 
               value="Submit to MyHits" 
               id="myHitsSubmit" />
               
        <span id="myHitsLoading" 
              style="display: none"
              class="loading">Loading...</span>
  
      </div>
    </form>

  </div>

  <script type="text/javascript">
    // <![CDATA[
    
    document.observe( "dom:loaded", function() {

      $("myHitsSubmit").observe( "click", function( e ) {

        // disable the form and show the spinner
        $("myHitsLoading").show();

        // set up an Updater that will retrieve the alignment
        var r = new Ajax.Updater(
          "myHitsText",
          "http://pfam.sanger.ac.uk/family/PF00023/alignment/download/format",
          {
            parameters: { acc:     "PF00023",
                          alnType: $F("mhTypeS") ? "seed" : "full", 
                          format:  "fasta",
                          gaps:    "dashes" },
            onSuccess: function( oResponse ) { 
              $("myHitsText").value = oResponse.responseText;
              $("myHitsForm").submit();
            },
            onFailure: function() {
              $("myHitsLoading")
                .removeClassName("loading")
                .update( "There was a problem retrieving the alignment" );                                  
            }
          } );
      } );
    } );

    // ]]>
  </script>

</div>

<!-- end of align block -->



<!-- start logo block -->

<div class="block" id="logoBlock">
  <div class="handle">
    <h1>HMM logo</h1>
  </div>
  <div class="blockContent">
    <p>
      HMM logos is one way of visualising profile HMMs. Logos provide a
      quick overview of the properties of an HMM in a graphical form. You can 
      see a more detailed description of HMM logos and find out how you can 
      interpret them
      <a class="ext" href="http://www.sanger.ac.uk/Software/analysis/logomat-m/help.shtml">
        here</a>.
      <span onclick="reveal( this, 'logoNotes', false, true );"
            class="moreLink">
        More...</span>
    </p>
    <div id="logoNotes" style="display: none">
      <p>
        If you find these logos useful in your own work, please consider citing
        the following article:
      </p>
      <div class="citation">
        <span class="title">
          <a class="ext" 
             href="http://dx.doi.org/10.1186/1471-2105-5-7">
            HMM Logos for visualization of protein families</a>: 
        </span>
        <span class="authors">
          B. Schuster-B&#246;ckler, J. Schultz, S. Rahmann
        </span>
        <span class="ref">
          <span class="jrnl">BMC Bioinformatics</span>&nbsp;(2004)
          &nbsp;5:7
        </span>
      </div>
    </div>

    <div id="logo" style="width: 100%; overflow: auto"></div>

  </div>

  <script type="text/javascript">
    // <![CDATA[
    
    Event.observe( window, "load", function() {
      var r = new Ajax.Request(
        "http://pfam.sanger.ac.uk/family/PF00023/logo",
        {
          method: 'get',
          evalScripts: true,
          onSuccess: function( oResponse ) {
            $("logo").update( oResponse.responseText );
          },
          on204: function( oResponse ) {
            $("logo").update( "We could not find a logo for this entry." );
          }
        }
      );
    } );

// ]]> 
  </script>

</div>

<!-- end of logo block -->



<!-- start of phyloBlock -->

<div class="block" id="phyloBlock">
  <div class="handle">
    <h1>Trees</h1>
  </div>
  <div class="blockContent">
    <p>
      This page displays the phylogenetic tree for this family's seed
      alignment. We use 
      <a class="ext" href="http://www.microbesonline.org/fasttree/">FastTree</a> 
      to calculate neighbour join trees with a local bootstrap based on 100
      resamples (shown next to the tree nodes). FastTree calculates
      approximately-maximum-likelihood phylogenetic trees from our seed
      alignment.
    </p> 

    <div id="alignmentTree">
      <span id="treeSpinner"
            style="display: none"
            class="loading">Loading...</span>
    </div>

    <script type="text/javascript">
      // <![CDATA[

      document.observe( "dom:loaded", function() {

        // submit the AJAX request that will load the image map and the 
        // associated <img>
        var r = new Ajax.Request(
          "http://pfam.sanger.ac.uk/family/PF00023/tree/html", 
          { 
            method: "get",
            onSuccess: function( oResponse ) {
              $("alignmentTree").update( oResponse.responseText );
            },
            on204: function(){
              // show a simple error message if we dont get back a tree
              $("alignmentTree").update(
                 new Element( "div", { id:      "seed_tree",
                                       "class": "treemap" } )
                   .update( "We could not load the tree" )
              );
            }
          }
        );

      } );

      // ]]>
    </script>

    <p>
      <strong>Note:</strong> You can also download the
      <a href="http://pfam.sanger.ac.uk/family/PF00023/tree/download">data file</a>
      for the tree.
    </p>

  </div>
</div>

<!-- end of phyloBlock -->



<!-- start curation block -->

<div class="block" id="curationBlock">
  <div class="handle">
    <h1>Curation and family details</h1>
  </div>
  <div class="blockContent">

    <p>
      This section shows the detailed information about the Pfam family. You 
      can see the definitions of many of the terms in this section in the 
      <a href="http://pfam.sanger.ac.uk/help?tab=helpGlossaryBlock">glossary</a> and a fuller
      explanation of the scoring system that we use in the 
      <a href="http://pfam.sanger.ac.uk/help?tab=helpScoresBlock">scores</a> section of the
      help pages. 
    </p>

    <h2>
      Curation
      <a href="http://pfam.sanger.ac.uk/help?tab=helpScoresBlock"
         title="View help on the curation process">
  	 		<img src="http://pfam.sanger.ac.uk/shared/images/info.gif" 
             alt="View help on the curation process"
             class="info" /></a>
    </h2>

    

  	

    <table class="layout" summary="Curation information for this family">
  	  <tbody>
        <tr class="even">
    		  <td class="label">Seed source:</td>
  	      <td class="data">
  	        Swissprot_feature_table
            </td>
    		</tr>
        <tr class="odd">
  	      <td class="label">Previous IDs:</td>
          <td class="data">
            
              ank; 
            
          </td>
        </tr>
        <tr class="even">
  	      <td class="label">Type:</td>
  	      <td class="data">
              Repeat
  	      </td>
  	    </tr>
        <tr class="odd">
          <td class="label">Author:</td>
          <td class="data">Bateman A, Sonnhammer ELL</td>
        </tr>
        <tr class="even">
  	      <td class="label">Number in seed:</td>
  	      <td class="data">
            1072
  	      </td>
  	    </tr>
        <tr class="odd">
          <td class="label">Number in full:</td>
    		  <td class="data">
            8812
  	      </td>
  	    </tr>
        <tr class="even">
          <td class="label">Average length of the domain:</td>
    		  <td class="data">
            32.40 aa
  	      </td>
  	    </tr>
        <tr class="odd">
          <td class="label">Average identity of full alignment:</td>
    		  <td class="data">
            29 %
  	      </td>
  	    </tr>
        <tr class="even">
          <td class="label">Average coverage of the sequence by the domain:</td>
          <td class="data">
            5.11 %
          </td>
        </tr>
      </tbody>
  	</table>

    <h2>
      HMM information
  	  <a href="http://pfam.sanger.ac.uk/help?tab=helpScoresBlock"
         title="View help on HMM parameters">
        <img src="http://pfam.sanger.ac.uk/shared/images/info.gif" 
             class="info" 
             alt="View help on HMM parameters" /></a>
    </h2>

    <table class="layout" summary="HMM information for this family">
      <tbody>
        <tr class="odd">
	      <td class="label">HMM build commands:</td>
          <td class="data">
            <div><em>build method:</em> hmmbuild  -o /dev/null HMM SEED</div>
            <div><em>search method:</em> hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq</div>
          </td>
  	    </tr>
        <tr class="even">
          <td class="label" id="tableLabel">Model details:</td>
          <td class="data">
            <table class="details" summary="HMM details">
              <thead>
                <tr>
                  <th>Parameter</th>
                  <th>Sequence</th>
                  <th>Domain</th>
                </tr>
              </thead>
              <tbody>
                <tr class="odd">
                  <td class="label">Gathering cut-off</td>
                  <td> 20.6</td>
                  <td> 14.7</td>
                </tr>
                <tr class="even">
                  <td class="label">Trusted cut-off</td>
                  <td> 20.6</td>
                  <td> 14.7</td>
                </tr>
                <tr class="odd">
                  <td class="label">Noise cut-off</td>
                  <td> 20.5</td>
                  <td> 14.6</td>
                </tr>
              </tbody>
            </table>
  	      </td>
        </tr>
        <tr class="odd">
          <td class="label">Model length:</td>
          <td class="data">
            33
          </td>
  	    </tr>
        <tr class="even">
          <td class="label">Family (HMM) version:</td>
          <td class="data">
            25
          </td>
  	    </tr>
        <tr class="odd">
          <td class="label">Download:</td>
          <td class="data">
             <a href="http://pfam.sanger.ac.uk/family/PF00023/hmm">
               download</a> the raw HMM for this family
          </td>
        </tr>
      </tbody>
    </table>

  </div>
</div>

<!-- end curation block --> 



<!-- start species block -->

<div class="block" id="speciesBlock">
  <div class="handle">
    <h1>Species distribution</h1>
  </div>
  <div class="blockContent">

    <div id="speciesTreeTabs" class="nestedTabs yui-navset">

      <ul id="speciesTreeTabsNav" class="yui-nav">
        <li class="selected"><a href="#sunburstTreeTab">Sunburst</a></li>
        <li><a href="#yuiTreeTab">Tree</a></li> 
      </ul>
      
      <div class="yui-content">
  
        <!-- start of sunburst tab -->

        <div id="sunburstTreeTab"> 

          

<div id="sunburstControls">

  <div id="sunburstControlsHeader">
    <h3>Sunburst controls</h3>
    <span id="sunburstControlsToggle">Show</span>
    <div class="cleaner"><!-- empty --></div>
  </div>

  <div id="sunburstControlsContent" style="display: none">
    <!-- sub-tree markup will go here -->
    <div id="weightWrapper"
         class="sunburstControlPanel">
      <h3>Weight segments by...</h3>
      <span>
        <label for="weightSeq">
          <input type="radio" name="weight" id="weightSeq" value="1" checked="checked" />
          number of  sequences
        </label>
        <br />
        <label for="weightSpecies">
          <input type="radio" name="weight" id="weightSpecies" value="1" />
          number of  species
        </label>
      </span>
    </div>
    <div id="sliderWrapper"
         class="sunburstControlPanel">
      <h3>Change the size of the sunburst</h3>
      <div id="sliderSmallScale">Small</div>
      <div id="sliderLargeScale">Large</div>
      <div id="sliderScale" class="slider">
        <div class="handle"></div>
      </div>
    </div>
    <div id="sunburstColours"
         class="sunburstControlPanel">
      <h3>Colour assignments</h3>
      <table summary="Sunburst colour assignments">
        <tbody>
          <tr>
            <td class="narrow">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/archea.png" alt="Archea" />
              Archea
            </td>
            <td class="wide">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/eukaryota.png" alt="Eukaryota" />
              Eukaryota
            </td>
          </tr>
          <tr>
            <td class="narrow">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/bacteria.png" alt="Bacteria" />
              Bacteria
            </td>
            <td class="wide">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/other_sequences.png" alt="Other sequences" />
              Other&nbsp;sequences
            </td>
          </tr>
          <tr>
            <td class="narrow">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/viruses.png" alt="Viruses" />
              Viruses
            </td>
            <td class="wide">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/unclassified.png" alt="Unclassified" />
              Unclassified
            </td>
          </tr>
          <tr>
            <td class="narrow">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/viroids.png" alt="Viroids" />
              Viroids
            </td>
            <td class="wide">
              <img src="http://pfam.sanger.ac.uk/shared/images/sunburst_colours/unclassified_sequence.png" alt="Unclassified sequence" />
              Unclassified&nbsp;sequence
            </td>
          </tr>
        </tbody>
      </table>
    </div>
    <div id="selectionControls"
         
         class="sunburstControlPanel">
      <h3>Selections</h3>
      <form action="http://pfam.sanger.ac.uk/family/PF00023?tab=pdbBlock" 
            id="retrieveSelectedSeqs"
            method="post">
        <div>
          <input type="hidden" name="dl" value="1" />
          <input type="hidden" name="accessions" id="selectedAccessions" />
        </div>
      </form>
      <div>
        <div id="sunburstSelectionTools">
          <p>
            <span id="sunburstAlignSelectionSwitch"
                  class="link">Align</span> selected sequences to HMM
          </p>
          <p>
            <span id="sunburstDLSelectionSwitch"
                  class="link">Generate</span> a FASTA-format file
          </p>
          <p>
            <span id="sunburstClearSelection"
                  class="link">Clear</span> selection
          </p>
        </div>
        <div id="sunburstSpinner"
              style="display: none"
              class="loading">Storing selection&hellip;</div>
      </div>
      <div id="sunburstSelectionCount"
           style="display: none">
        <h4>Currently selected:</h4>
        <ul>
          <li><span id="sunburstSequencesCount">0</span> sequences</li>
          <li><span id="sunburstSpeciesCount">0</span> species</li>
        </ul>
      </div>
      <div style="display: none" class="errors" id="sunburstErrors"></div>
    </div>
  </div>

</div>

<div id="sunburstTreeDesc">
  <p>
    This visualisation provides a simple graphical representation of
    the distribution of this family across species. You can find the 
    original interactive tree in the 
    <span class="link" onclick="speciesTreeTabView.selectTab(1)">
      adjacent tab</span>.
    <span onclick="reveal( this, 'sunburstNotes', false, true );"
          class="moreLink">
      More...</span>
  </p>

  <div id="sunburstNotes" style="display: none">
    <p>
      This chart is a modified &quot;sunburst&quot; visualisation of
      the species tree for this family. It shows each node in the
      tree as a separate arc, arranged radially with the superkingdoms
      at the centre and the species arrayed around the outermost
      ring.
    </p>

    <h2>How the sunburst is generated</h2>

    <p>
      The tree is built by considering the taxonomic lineage of each
      sequence that has a match to this family. For each node in the
      resulting tree, we draw an arc in the sunburst. The radius of
      the arc, its distance from the root node at the centre of the
      sunburst, shows the taxonomic level (&quot;superkingdom&quot;,
      &quot;kingdom&quot;, etc). The length of the arc represents
      either the number of sequences represented at a given level, or
      the number of species that are found beneath the node in the
      tree. The weighting scheme can be changed using the sunburst
      controls.
    </p>
    <p>
      In order to reduce the complexity of the representation, we 
      reduce the number of taxonomic levels that we show. We consider
      only the following eight major taxonomic levels:
    </p>
    <ul>
      <li>superkingdom</li>
      <li>kingdom</li>
      <li>phylum</li>
      <li>class</li>
      <li>order</li>
      <li>family</li>
      <li>genus</li>
      <li>species</li>
    </ul>

    <h2>Colouring and labels</h2>

    <p>
      Segments of the tree are coloured approximately according to
      their superkingdom. For example, archeal branches are coloured
      with shades of orange, eukaryotes in shades of purple, etc. The
      colour assignments are shown under the sunburst controls. Where
      space allows, the name of the taxonomic level will be written on
      the arc itself.
    </p>
    <p>
      As you move your mouse across the sunburst, the current node
      will be highlighted. In the top section of the controls panel we
      show a summary of the lineage of the currently highlighed node.
      If you pause over an arc, a tooltip will be shown, giving the
      name of the taxonomic level in the title and a summary of the
      number of sequences and species below that node in the tree. 
    </p>

    <h2>Anomalies in the taxonomy tree</h2>

    <p>
      There are some situations that the sunburst tree cannot easily
      handle and for which we have work-arounds in place.
    </p>

    <h3>Missing taxonomic levels</h3>

    <p>
      Some species in the taxonomic tree may not have one or more of
      the main eight levels that we display. For example, <em>Bos
      taurus</em> is not assigned an order in the NCBI taxonomic tree.
      In such cases we mark the omitted level with, for example,
      &quot;No order&quot;, in both the tooltip and the lineage
      summary.
    </p>

    <h3>Unmapped species names</h3>
    
    <p>
      The tree is built by looking at each sequence in the full
      alignment for the family. We take the name of the species given
      by UniProt and try to map that to the full taxonomic tree from
      NCBI. In some cases, the name chosen by UniProt does not map to
      any node in the NCBI tree, perhaps because the chosen name is
      listed as a synonym or a misspelling in the NCBI taxonomy.
    </p>
    <p>
      So that these nodes are not simply omitted from the sunburst
      tree, we group them together in a separate branch (or segment of
      the sunburst tree). Since we cannot determine the lineage for
      these unmapped species, we show all levels between the
      superkingdom and the species as &quot;uncategorised&quot;.
    </p>

    <h3>Sub-species</h3>

    <p>
      Since we reduce the species tree to only the eight main
      taxonomic levels, sequences that are mapped to the sub-species
      level in the tree would not normally be shown. Rather than leave
      out these species, we map them instead to their parent species.
      So, for example, for sequences belonging to one of the
      <em>Vibrio cholerae</em> sub-species in the NCBI taxonomy, we
      show them instead as belonging to the species <em>Vibrio
      cholerae</em>.
    </p>

    <h3>Too many species/sequences</h3>

    <p>
      For large species trees, you may see blank regions in the outer
      layers of the sunburst. These occur when there are large numbers
      of arcs to be drawn in a small space. If an arc is less than
      approximately one pixel wide, it will not be drawn and the space
      will be left blank. You may still be able to get some
      information about the species in that region by moving your mouse
      across the area, but since each arc will be very small, it will
      be difficult to accurately locate a particular species.
    </p>

    <hr />
  </div>
</div>

<div id="sunburst">
  <span class="loading">Loading sunburst data...</span>
</div>

<script type="text/javascript">
  // <![CDATA[

  var sunburstController,
      treeData;

  document.observe("dom:loaded", function() {

    var r = new Ajax.Request( 
      "http://pfam.sanger.ac.uk/family/PF00023/sunburst/json",
      {
        method: "get",
        onSuccess: function( response ) {
          treeData = response.responseJSON;
          sunburstController = new SunburstController( "http://pfam.sanger.ac.uk/family/PF00023?tab=pdbBlock", treeData, "pfam" );
          $("sunburstControlsContent").show();
          $("sunburstControlsToggle").update("Hide");
        },
        onFailure: function( response ) {
          $("sunburst").update( "There was a problem retrieving the sunburst date for this family." );
        }
      }
    );

  } );

  // ]]>
</script>



        </div>

        <!-- end of sunburst tab -->

        <!-- start of yui-tree tab -->

        <div id="yuiTreeTab">

          

<div id="treeTools">

  <div id="toolsHeader">
    <h3>Tree controls</h3>
    <span id="toolsToggle">Hide</span>
		<div class="cleaner"><!-- empty --></div>
  </div>

  <div id="toolsContent" style="display: none">

    <ul class="bare">
      <li>
        Fully <a href="#" onclick="tree.expandAll();return false;">expand</a> tree
      </li>
      <li>
        Fully <a href="#" onclick="tree.collapseAll();return false;">collapse</a> tree
      </li>
      <li>
        <div id="ddph">Expand tree...</div>
      </li>
    </ul>

    <h3>Annotation</h3>
    <ul class="bare"> 
      <li>
        <a id="seedToggle" 
           href="#"
           onclick="toggleHighlightSeed();return false;">Hide</a> highlighting 
        of species in seed
      </li>
      <li>
        <a id="sumToggle"
           href="#"
           onclick="toggleShowSummaries();return false;">Hide</a> summaries
      </li>
      <li>
        Key: <span class="specSum">species</span>, 
             <span class="seqSum">sequences</span>,
             <span class="domSum">regions</span>
      </li>
    </ul>

    <h3>Download tree</h3>
    <ul class="bare">
      <li>
        <a href="http://pfam.sanger.ac.uk/speciestree/text?loadTree=1&amp;acc=PF00023">Save</a> 
        a text representation
      </li>
    </ul>
    
    <h3>Selected sequences</h3>
    <ul class="bare">
      <li class="small">
        (<span class="link" onclick="unhighlightAll();">Uncheck</span> all)
      </li>
        <li>
          <em>View</em>
          <ul>
            <li>
              <span onclick="collectSequences( 'G', 'PF00023' );"
                    class="link">graphically</span>
            </li>
              <li>
                as an
                <span onclick="collectSequences( 'A', 'PF00023' );"
                      class="link">alignment</span>
              </li>
          </ul>
        </li>
        <li>
          <em>Download</em>
          <ul>
            <li>
              <span onclick="collectSequences( 'L', 'PF00023' );"
                    class="link">sequence accessions</span>
            </li>
            <li>
              <span onclick="collectSequences( 'F', 'PF00023' );"
                    class="link">sequences</span> in FASTA format
            </li>
          </ul>
        </li>
      
      <li id="stError"
          style="display: none" ></li>
    </ul>

  </div>

</div>


<div id="speciesTreeDesc">
  <p>
    The tree shows the occurrence of this domain across different species.
    <span onclick="reveal( this, 'speciesNotes', false, true );"
          class="moreLink">
      More...</span>
  </p>

  <div id="speciesNotes" style="display: none">
    <h2>Species trees</h2>
    <p>
      We show the species tree in one of two ways. For smaller trees we try
      to show an interactive representation, which allows you to select
      specific nodes in the tree and view them as an alignment or as a set 
      of Pfam domain graphics.
    </p>
    <p>
      Unfortunately we have found that there are problems viewing the 
      interactive tree when the it becomes larger than a certain limit. 
      Furthermore, we have found that Internet Explorer can become 
      unresponsive when viewing some trees, regardless of their size. 
      We therefore show a text representation of the species tree when the
      size is above a certain limit or if you are using Internet Explorer
      to view the site.
    </p>
    <p>
      If you are using IE you can still load the interactive tree by 
      clicking the &quot;Generate interactive tree&quot; button, but please 
      be aware of the potential problems that the interactive species tree 
      can cause.
    </p>
    
    <h3>Interactive tree</h3>
    <p>
      For all of the domain matches in a full alignment, we count the 
      number that are found on all sequences in the alignment. 
      This total is shown in the <span class="domSum">purple</span> box.
    </p>
    <p>
      We also count the number of unique sequences on which each domain is 
      found, which is shown in <span class="seqSum">green</span>.
      <strong>Note</strong> that a domain may appear multiple times on the
      same sequence, leading to the difference between these two numbers.
    </p>
    <p>
      Finally, we group sequences from the same organism according to the 
      <a class="ext" href="http://www.ncbi.nlm.nih.gov/"><acronym 
      title="National Center for Biotechnology Information">NCBI</acronym></a> 
      code that is assigned by
      <a class="ext" href="http://www.uniprot.org/">UniProt</a>, 
      allowing us to count the number of distinct sequences on which the 
      domain is found. This value is shown in the <span class="specSum">
        pink</span> boxes.
    </p>
    <p>
      We use the NCBI species tree to group organisms according to their 
      taxonomy and this forms the structure of the displayed tree.
      <strong>Note</strong> that in some cases the trees are too large (have
      too many nodes) to allow us to build an interactive tree, but in most
      cases you can still view the tree in a plain text, non-interactive
      representation. Those species which are represented in the seed
      alignment for this domain are <span class="highlightSeed">
        highlighted</span>.
    </p>
    <p>
      You can use the tree controls to manipulate how the interactive tree
      is displayed:
    </p>
    <ul>
      <li>show/hide the summary boxes</li>
      <li>highlight species that are represented in the seed alignment</li>
      <li>expand/collapse the tree or expand it to a given depth</li>
      <li>select a sub-tree or a set of species within the tree and view
        them graphically or as an alignment</li>
      <li>save a plain text representation of the tree</li>
    </ul>
    <hr />
  </div>

</div>

<div id="treeDiv" class="ygtv-checkbox">
  <p id="stph" class="loading">Loading...</p>
  <p>
    <strong>Please note:</strong> for large trees this can take some time.
    While the tree is loading, you can safely switch away from this
    tab but if you browse away from the family page entirely, the tree
    will not be loaded.
  </p>
</div>




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    </div> 

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    // the URL to visit when the user selects nodes and wants to download the 
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    // the URL to visit when the user selects nodes and wants to download the 
    // selected sequence accessions
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    // the URL to visit when the user selects nodes and wants to download the 
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</div>

<!-- end of species block -->

<!-- start interactions block -->

<div class="block" id="ipfamBlock">
  <div class="handle">
    <h1>Interactions</h1>
  </div>
  <div class="blockContent">

    <p>
      There are 
      <b>7</b> 
      interactions for this family.
      <span onclick="reveal( this, 'intNotes', false, true );"
            class="moreLink">
        More...</span>
    </p>
    <div id="intNotes" style="display: none">
      <p>
        We determine these interactions using 
        <a href="http://www.sanger.ac.uk/Software/Pfam/iPfam"><em>i</em>Pfam</a>, 
        which considers the interactions between residues in three-dimensional 
        protein structures and maps those interactions back to Pfam families. 
        You can find more information about the <em>i</em>Pfam algorithm in the
        <a href="http://bioinformatics.oupjournals.org/cgi/content/full/21/3/410">
          journal article</a> that accompanies the website.
      </p>
      <hr />
    </div>

    
    
      <span class="listItem">
        <a href="http://pfam.sanger.ac.uk/family/PF00870">
          P53</a>
      </span>
    
      <span class="listItem">
        <a href="http://pfam.sanger.ac.uk/family/PF01833">
          TIG</a>
      </span>
    
      <span class="listItem">
        <a href="http://pfam.sanger.ac.uk/family/PF00554">
          RHD</a>
      </span>
    
      <span class="listItem">
        <a href="http://pfam.sanger.ac.uk/family/PF00069">
          Pkinase</a>
      </span>
    
      <span class="listItem">
        <a href="http://pfam.sanger.ac.uk/family/PF00023">
          Ank</a>
      </span>
    
      <span class="listItem">
        <a href="http://pfam.sanger.ac.uk/family/PF01412">
          ArfGap</a>
      </span>
    
      <span class="listItem">
        <a href="http://pfam.sanger.ac.uk/family/PF00018">
          SH3_1</a>
      </span>
    

  </div>
</div>

<!-- end interactions block -->

<!-- start pdb block -->

<div class="block" id="pdbBlock">
  <div class="handle">
    <h1>Structures</h1>
  </div>
  <div class="blockContent">  
    <p>
      For those sequences which have a structure in the
      <a class="ext" href="http://www.wwpdb.org/">Protein DataBank</a>, we
      use the mapping between <a class="ext" 
        href="http://www.uniprot.org/">UniProt</a>, PDB and Pfam coordinate
      systems from the <a class="ext" 
        href="http://www.ebi.ac.uk/pdbe/">PDBe</a> group, to allow us to map
      Pfam domains onto UniProt sequences and three-dimensional protein 
      structures. The table below
      shows the structures on which the <strong>Ank</strong>
      domain has been found. There are 214
      instances of this domain found in the PDB. Note that there may be 
      multiple copies of the domain in a single PDB structure, since many 
      structures contain multiple copies of the same protein seqence.
    </p>

    <div id="familyStructureTabHolder">
      <p id="fstrucph" class="loading">
        Loading structure mapping...
      </p>  
    </div> <!-- end of familyStructureTabHolder -->
  </div>

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    } );

// ]]>
  </script>

</div>

<!-- end pdb block -->

    </div> <!-- end of "content" -->

  </div>

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