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0  structures 123  species 0  interactions 863  sequences 8  architectures

Family: Innexin (PF00876)

Summary: Innexin

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Innexin Edit Wikipedia article

Innexin
Identifiers
Symbol Innexin
Pfam PF00876
InterPro IPR000990
TCDB 1.A.25

An innexin is a member of a family of proteins that create gap junctions in invertebrates. The innexin proteins have four transmembrane spanning units and, like the vertebrate connexin gap junction protein, six innexin subunits together form a channel, an "innexon", in the plasma membrane between the inside and outside of the cell.[1] Two innexons in apposed plasma membranes can form a gap junction. Innexin genes have homologues in vertebrates called pannexins. However, increasing evidence suggests that pannexons do not form gap junctions unless overexpressed in tissue. Thus, pannexins and innexins differ functionality and should be treated as separate families.[2]

These proteins have been named innexins.[3] Gap junctions are composed of membrane proteins that form a channel permeable to ions and small molecules connecting the cytoplasm of adjacent cells. Although gap junctions provide similar functions in all multicellular organisms, until the late 1990s it was not known what proteins invertebrates used for this purpose. While the connexin family of gap junction proteins was well-characterised in vertebrates, no homologs were found in non-chordates. Gap junction molecules with no sequence homology to connexins were initially identified in fruit flies. It was suggested that these proteins are specific invertebrate gap junctions, and they were thus named "innexins" (invertebrate analog of connexins).[4] They were later identified in diverse invertebrates. Once the human genome was sequenced, innexin homologs were identified in humans and then in other vertebrates, indicating their ubiquitous distribution in the animal kingdom. They were called "pannexins" (from the Greek pan - all, throughout, and Latin nexus - connection, bond).[5][6]

Genomes of vertebrates carry probably a conserved set of three pannexin paralogs (PANX1, PANX2 and PANX3). Invertebrate genomes may contain more than a dozen pannexin (innexin) genes. Vinnexins, viral homologs of pannexins/innexins, were identified in Polydnaviruses that occur in obligate symbiotic associations with parasitoid wasps. It was suggested that virally encoded vinnexin proteins may function to alter gap junction proteins in infected host cells, possibly modifying cell-cell communication during encapsulation responses in parasitized insects.[7][8] Structurally pannexins are similar to connexins. Both types of protein consist of a cytoplasmic N-terminal domain, followed by four transmembrane segments that delimit two extracellular and one cytoplasmic loops; the C- terminal domain is cytoplasmic.

Examples[edit]

Examples include:

See also[edit]

References[edit]

  1. ^ Bao, L.; Samuels, S.; Locovei, S.; MacAgno, E.; Muller, K.; Dahl, G. (2007). "Innexins Form Two Types of Channels". FEBS Letters 581 (29): 5703–5708. doi:10.1016/j.febslet.2007.11.030. PMC 2489203. PMID 18035059.  edit
  2. ^ Dahl G. & Harris A. 2009. Pannexins or Connexins? Chapter 12. In: A. Harris, D. Locke (eds.), Connexins: A Guide DOI 10.1007/978-1-59745-489-6_12,
  3. ^ Lee R, Phelan P, Stebbings LA, Baines RA, Bacon JP, Davies JA, Ford C, Todman MG, Avery L, Barnes TM, Hekimi S, Shaw JE, Starich TA, Curtin KD, Wyman RJ, Sun YA (1998). "Innexins: a family of invertebrate gap-junction proteins". Trends Genet. 14 (9): 348–349. doi:10.1016/S0168-9525(98)01547-9. PMID 9769729. 
  4. ^ Phelan P, Stebbings LA, Baines RA, Bacon JP, Davies JA, Ford C (1998). "Drosophila Shaking-B protein forms gap junctions in paired Xenopus oocytes". Nature 391 (6663): 181–184. doi:10.1038/34426. PMID 9428764. 
  5. ^ Lukyanov S, Usman N, Panchin Y, Kelmanson I, Matz M, Lukyanov K (2000). "A ubiquitous family of putative gap junction molecules". Curr. Biol. 10 (13): –. doi:10.1016/S0960-9822(00)00576-5. PMID 10898987. 
  6. ^ Matz MV, Lukyanov SA, Kelmanson IV, Shagin DA, Usman N, Panchin YV (2002). "Altering electrical connections in the nervous system of the pteropod mollusc Clione limacina by neuronal injections of gap junction mRNA". Eur. J. Neurosci. 16 (12): 2475–2476. doi:10.1046/j.1460-9568.2002.02423.x. PMID 12492443. 
  7. ^ Turnbull M, Webb B (2002). "Perspectives on polydnavirus origins and evolution". Adv. Virus Res. 58: 203–254. doi:10.1016/S0065-3527(02)58006-4. PMID 12205780. 
  8. ^ Kroemer JA, Webb BA (2004). "Polydnavirus genes and genomes: emerging gene families and new insights into polydnavirus replication". Annu Rev Entomol 49 (1): 431–456. doi:10.1146/annurev.ento.49.072103.120132. PMID 14651471. 

Further reading[edit]

  • Phelan P, Bacon J, Davies J, Stebbings L, Todman M, Avery L, Baines R, Barnes T, Ford C, Hekimi S, Lee R, Shaw J, Starich T, Curtin K, Sun Y, Wyman R (1998). "Innexins: a family of invertebrate gap-junction proteins.". Trends Genet 14 (9): 348–9. doi:10.1016/S0168-9525(98)01547-9. PMID 9769729. 
  • Phelan P, Stebbings L, Baines R, Bacon J, Davies J, Ford C (1998). "Drosophila Shaking-B protein forms gap junctions in paired Xenopus oocytes.". Nature 391 (6663): 181–4. doi:10.1038/34426. PMID 9428764. 
  • Dykes I, Macagno E (2006). "Molecular characterization and embryonic expression of innexins in the leech Hirudo medicinalis.". Dev Genes Evol 216 (4): 185–97. doi:10.1007/s00427-005-0048-1. PMID 16440200. 

External links[edit]

This article incorporates text from the public domain Pfam and InterPro IPR000990


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Innexin Provide feedback

This family includes the drosophila proteins Ogre and shaking-B, and the C. elegans proteins Unc-7 and Unc-9. Members of this family are integral membrane proteins which are involved in the formation of gap junctions [1]. This family has been named the Innexins [2].

Literature references

  1. Phelan P, Stebbings LA, Baines RA, Bacon JP, Davies JA, Ford C; , Nature 1998;391:181-184.: Drosophila Shaking-B protein forms gap junctions in paired Xenopus oocytes. PUBMED:9428764 EPMC:9428764

  2. Phelan P, Bacon JP, Davies JA, Stebbings LA, Todman MG, Avery L, Baines RA, Barnes TM, Ford C, Hekimi S, Lee R, Shaw JE, Starich TA, Curtin KD, Sun Y, Wyman RJ; , Trends Genet 1998;14:348-349.: Innexins: a family of invertebrate gap-junction proteins. PUBMED:9769729 EPMC:9769729

  3. Phelan P,Starich TA , Bioessays 2001;23:388-396.: Innexins get into the gap. PUBMED:11340620 EPMC:11340620


External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR000990

The pannexin family combines invertebrate gap junction proteins and their vertebrate homologs. These proteins have been named innexins [PUBMED:9769729]. Gap junctions are composed of membrane proteins, which form a channel permeable for ions and small molecules connecting cytoplasm of adjacent cells. Although gap junctions provide similar functions in all multicellular organisms, until recently it was believed that vertebrates and invertebrates use unrelated proteins for this purpose. While the connexins family of gap junction proteins is well- characterised in vertebrates, no homologs have been found in invertebrates. In turn, gap junction molecules with no sequence homology to connexins have been identified in insects and nematodes. It has been suggested that these proteins are specific invertebrate gap junctions, and they were thus named innexins (invertebrate analog of connexins) [PUBMED:9428764]. As innexin homologs were recently identified in other taxonomic groups including vertebrates, indicating their ubiquitous distribution in the animal kingdom, they were called pannexins (from the Latin pan-all, throughout, and nexus-connection, bond) [PUBMED:10898987, PUBMED:12492443, PUBMED:5028292].

Genomes of vertebrates carry probably a conserved set of 3 pannexin paralogs (PANX1, PANX2 and PANX3). Invertebrate genomes may contain more than a dozen pannexin (innexin) genes. Vinnexins, viral homologs of pannexins/innexins, were identified in Polydnaviruses that occur in obligate symbiotic associations with parasitoid wasps. It was suggested that virally encoded vinnexin proteins may function to alter gap junction proteins in infected host cells, possibly modifying cell-cell communication during encapsulation responses in parasitized insects [PUBMED:12205780, PUBMED:14651471]. Structurally pannexins are simillar to connexins. Both types of protein consist of a cytoplasmic N-terminal domain, followed by four transmembrane segments that delimit two extracellular and one cytoplasmic loops; the C- terminal domain is cytoplasmic.

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  Seed
(99)
Full
(863)
Representative proteomes NCBI
(840)
Meta
(1)
RP15
(230)
RP35
(281)
RP55
(485)
RP75
(560)
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  Seed
(99)
Full
(863)
Representative proteomes NCBI
(840)
Meta
(1)
RP15
(230)
RP35
(281)
RP55
(485)
RP75
(560)
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You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

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Seed source: Pfam-B_779 (release 3.0)
Previous IDs: Ogre;
Type: Family
Author: Bateman A
Number in seed: 99
Number in full: 863
Average length of the domain: 283.30 aa
Average identity of full alignment: 22 %
Average coverage of the sequence by the domain: 76.49 %

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HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 21.8 21.8
Trusted cut-off 21.9 22.1
Noise cut-off 21.4 21.7
Model length: 348
Family (HMM) version: 13
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