Summary: FecCD transport family
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FecCD transport family Provide feedback
This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.
Staudenmaier H, Van Hove B, Yaraghi Z, Braun V; , J Bacteriol 1989;171:2626-2633.: Nucleotide sequences of the fecBCDE genes and locations of the proteins suggest a periplasmic-binding-protein-dependent transport mechanism for iron(III) dicitrate in Escherichia coli. PUBMED:2651410 EPMC:2651410
Internal database links
|Similarity to PfamA using HHSearch:||ABC-3|
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR000522This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.
The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.
|Cellular component||membrane (GO:0016020)|
|Molecular function||transporter activity (GO:0005215)|
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Curation and family details
|Seed source:||Pfam-B_377 (release 3.0)|
|Author:||Finn RD, Bateman A|
|Number in seed:||145|
|Number in full:||19091|
|Average length of the domain:||306.10 aa|
|Average identity of full alignment:||28 %|
|Average coverage of the sequence by the domain:||92.97 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||13|
|Download:||download the raw HMM for this family|
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There are 2 interactions for this family. More...
We determine these interactions using iPfam, which considers the interactions between residues in three-dimensional protein structures and maps those interactions back to Pfam families. You can find more information about the iPfam algorithm in the journal article that accompanies the website.
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the FecCD domain has been found. There are 10 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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