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3  structures 25  species 0  interactions 43  sequences 1  architecture

Family: Tachykinin (PF02202)

Summary: Tachykinin family

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Tachykinin peptides Edit Wikipedia article

Tachykinin family
PDB 1myu EBI.jpg
Structure of the tachykinin peptide Kassinin.[1]
Identifiers
Symbol Tachykinin
Pfam PF02202
InterPro IPR002040
SMART TK
PROSITE PDOC00240
SCOP 1myu
SUPERFAMILY 1myu
OPM superfamily 152
OPM protein 1myu

Tachykinin peptides are one of the largest families of neuropeptides, found from amphibians to mammals. They were so named due to their ability rapidly to induce contraction of gut tissue.[2] The tachykinin family is characterized by a common C-terminal sequence, Phe-X-Gly-Leu-Met-NH2, where X is either an Aromatic or an Aliphatic amino acid. The genes that produce tachykinins encode precursor proteins called preprotachykinins, which are chopped apart into smaller peptides by posttranslational proteolytic processing. The genes also code for multiple splice forms that are made up of different sets of peptides.

Tachykinins[3][4][5] excite neurons, evoke behavioral responses, are potent vasodilators and contract (directly or indirectly) many smooth muscles. Tachykinins are from ten to twelve residues long.

The two human tachykinin genes are called TAC1 and TAC3 for historical reasons, and are equivalent to Tac1 and Tac2 of the mouse, respectively. TAC1 encodes neurokinin A (formerly known as substance K), neuropeptide K (which has also been called neurokinin K[6]), neuropeptide gamma, and substance P.[7] Alpha, beta, and gamma splice forms are produced; the alpha form lacks exon 6 and the gamma form lacks exon 4. All three splice forms of TAC1 produce substance P, but only the beta and gamma forms produce the other three peptides. Neuropeptide K and neuropeptide gamma are N-terminally longer versions of neurokinin A that appear to be final peptide products in some tissues.[2]

TAC3 encodes neurokinin B.[8]

The most notable tachykinin is Substance P.

Receptors[edit]

See main article at tachykinin receptor

There are three known mammalian tachykinin receptors termed NK1, NK2 and NK3. All are members of the 7 transmembrane g protein-coupled family of receptors and induce the activation of phospholipase C, producing inositol triphosphate. NK1, NK2 and NK3 selectively bind to substance P, neurokinin A, and neurokinin B, respectively. Whilst the receptors are not specific to any individual tachykinin, they do have differing affinity for the tachykinins:

  • NK1: SP>NKA>NKB
  • NK2: NKA>NKB>SP
  • NK3: NKB>NKA>SP.

Antagonists of neurokinin-1 (NK1) receptors (NK1 receptor antagonists), through which substance P acts, have been proposed to belong to a new class of antidepressants,[9] [10] while NK2 antagonists have been proposed as anxiolytics[11][12] and NK3 antagonists have been proposed as antipsychotics.[13] [14]

Tachykinin peptides are also involved in inflammation, and tachykinin receptor antagonists have been researched for use in treating inflammatory conditions such as asthma and irritable bowel syndrome.[15] [16] [17] The main use for which these drugs have been applied so far, however, is as antiemetics, in both human and veterinary medicine.[18] [19]

Examples of tachykinin antagonists include:[20]

Subfamilies[edit]

References[edit]

  1. ^ Grace RC, Lynn AM, Cowsik SM (February 2001). "Lipid induced conformation of the tachykinin peptide Kassinin". J. Biomol. Struct. Dyn. 18 (4): 611–21, 623–5. doi:10.1080/07391102.2001.10506693. PMID 11245256. 
  2. ^ a b Carter MS, Krause JE (July 1990). "Structure, expression, and some regulatory mechanisms of the rat preprotachykinin gene encoding substance P, neurokinin A, neuropeptide K, and neuropeptide gamma". J. Neurosci. 10 (7): 2203–14. PMID 1695945. 
  3. ^ Maggio JE (1988). "Tachykinins". Annu. Rev. Neurosci. 11: 13–28. doi:10.1146/annurev.ne.11.030188.000305. PMID 3284438. 
  4. ^ Helke CJ, Krause JE, Mantyh PW, Couture R, Bannon MJ (1990). "Diversity in mammalian tachykinin peptidergic neurons: multiple peptides, receptors, and regulatory mechanisms". FASEB J. 4 (6): 1606–15. PMID 1969374. 
  5. ^ Avanov AIa (1992). "Tachykinins and conformational aspects of their interactions with receptors". Mol. Biol. (Mosk) 26 (1): 5–24. PMID 1324401. 
  6. ^ Dornan WA, Vink KL, Malen P, Short K, Struthers W, Barrett C (August 1993). "Site-specific effects of intracerebral injections of three neurokinins (neurokinin A, neurokinin K, and neurokinin gamma) on the expression of male rat sexual behavior". Physiol. Behav. 54 (2): 249–58. doi:10.1016/0031-9384(93)90107-Q. PMID 7690487. 
  7. ^ Online 'Mendelian Inheritance in Man' (OMIM) TAC1 -162320
  8. ^ Online 'Mendelian Inheritance in Man' (OMIM) TAC3 -162330
  9. ^ Alvaro G, Di Fabio R (September 2007). "Neurokinin 1 receptor antagonists--current prospects". Curr Opin Drug Discov Devel 10 (5): 613–21. PMID 17786860. 
  10. ^ Duffy RA (May 2004). "Potential therapeutic targets for neurokinin-1 receptor antagonists". Expert Opin Emerg Drugs 9 (1): 9–21. doi:10.1517/eoed.9.1.9.32956. PMID 15155133. 
  11. ^ Salomé N, Stemmelin J, Cohen C, Griebel G (April 2006). "Selective blockade of NK2 or NK3 receptors produces anxiolytic- and antidepressant-like effects in gerbils". Pharmacol. Biochem. Behav. 83 (4): 533–9. doi:10.1016/j.pbb.2006.03.013. PMID 16624395. 
  12. ^ Louis C, Stemmelin J, Boulay D, Bergis O, Cohen C, Griebel G (March 2008). "Additional evidence for anxiolytic- and antidepressant-like activities of saredutant (SR48968), an antagonist at the neurokinin-2 receptor in various rodent-models". Pharmacol. Biochem. Behav. 89 (1): 36–45. doi:10.1016/j.pbb.2007.10.020. PMID 18045668. 
  13. ^ Spooren W, Riemer C, Meltzer H (December 2005). "Opinion: NK3 receptor antagonists: the next generation of antipsychotics?". Nat Rev Drug Discov 4 (12): 967–75. doi:10.1038/nrd1905. PMID 16341062. 
  14. ^ Chahl LA (August 2006). "Tachykinins and neuropsychiatric disorders". Curr Drug Targets 7 (8): 993–1003. doi:10.2174/138945006778019309. PMID 16918327. 
  15. ^ Groneberg DA, Harrison S, Dinh QT, Geppetti P, Fischer A (August 2006). "Tachykinins in the respiratory tract". Curr Drug Targets 7 (8): 1005–10. doi:10.2174/138945006778019318. PMID 16918328. 
  16. ^ Improta G, Broccardo M (August 2006). "Tachykinins: role in human gastrointestinal tract physiology and pathology". Curr Drug Targets 7 (8): 1021–9. doi:10.2174/138945006778019354. PMID 16918330. 
  17. ^ Boot JD, de Haas S, Tarasevych S, et al. (March 2007). "Effect of an NK1/NK2 receptor antagonist on airway responses and inflammation to allergen in asthma". Am. J. Respir. Crit. Care Med. 175 (5): 450–7. doi:10.1164/rccm.200608-1186OC. PMID 17170385. 
  18. ^ Navari RM (December 2007). "Fosaprepitant (MK-0517): a neurokinin-1 receptor antagonist for the prevention of chemotherapy-induced nausea and vomiting". Expert Opin Investig Drugs 16 (12): 1977–85. doi:10.1517/13543784.16.12.1977. PMID 18042005. 
  19. ^ Hickman MA, Cox SR, Mahabir S, et al. (June 2008). "Safety, pharmacokinetics and use of the novel NK-1 receptor antagonist maropitant (Cerenia) for the prevention of emesis and motion sickness in cats". J. Vet. Pharmacol. Ther. 31 (3): 220–9. doi:10.1111/j.1365-2885.2008.00952.x. PMID 18471143. 
  20. ^ Quartara L, Altamura M (August 2006). "Tachykinin receptors antagonists: from research to clinic". Curr Drug Targets 7 (8): 975–92. doi:10.2174/138945006778019381. PMID 16918326. 

External links[edit]

This article incorporates text from the public domain Pfam and InterPro IPR002040

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InterPro entry IPR002040

This family includes peptides, which belong to the tachykinin family. Tachykinins [PUBMED:3284438, PUBMED:1969374, PUBMED:1324401] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.

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Seed source: Alignment kindly provided by SMART
Previous IDs: none
Type: Family
Author: SMART
Number in seed: 12
Number in full: 43
Average length of the domain: 10.90 aa
Average identity of full alignment: 62 %
Average coverage of the sequence by the domain: 26.56 %

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HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 20.5 20.5
Trusted cut-off 20.9 20.5
Noise cut-off 20.1 20.4
Model length: 11
Family (HMM) version: 11
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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Tachykinin domain has been found. There are 3 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.

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