Summary: DNA binding protein S1FA
DNA binding protein S1FA Provide feedback
S1FA is a DNA-binding protein found in plants that specifically recognises the negative promoter element S1F .
Zhou DX, Bisanz-Seyer C, Mache R; , Nucleic Acids Res 1995;23:1165-1169.: Molecular cloning of a small DNA binding protein with specificity for a tissue-specific negative element within the rps1 promoter. PUBMED:7739894 EPMC:7739894
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This tab holds annotation information from the InterPro database.
InterPro entry IPR006779
S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [PUBMED:7739894].
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|Cellular component||nucleus (GO:0005634)|
|Molecular function||DNA binding (GO:0003677)|
|Biological process||regulation of transcription, DNA-dependent (GO:0006355)|
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Curation and family details
|Number in seed:||4|
|Number in full:||48|
|Average length of the domain:||66.70 aa|
|Average identity of full alignment:||66 %|
|Average coverage of the sequence by the domain:||44.78 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||8|
|Download:||download the raw HMM for this family|
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