Summary: Pep3/Vps18/deep orange family
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Pep3/Vps18/deep orange family Provide feedback
This region is found in a number of protein identified as involved in golgi function and vacuolar sorting. The molecular function of this region is unknown. The members of this family contain a C-terminal ring finger domain.
Shestopal SA, Makunin IV, Belyaeva ES, Ashburner M, Zhimulev IF; , Mol Gen Genet 1997;253:642-648.: Molecular characterization of the deep orange (dor) gene of Drosophila melanogaster. PUBMED:9065698 EPMC:9065698
Preston RA, Manolson MF, Becherer K, Weidenhammer E, Kirkpatrick D, Wright R, Jones EW; , Mol Cell Biol 1991;11:5801-5812.: Isolation and characterization of PEP3, a gene required for vacuolar biogenesis in Saccharomyces cerevisiae. PUBMED:1944264 EPMC:1944264
Robinson JS, Graham TR, Emr SD; , Mol Cell Biol 1991;11:5813-5824.: A putative zinc finger protein, Saccharomyces cerevisiae Vps18p, affects late Golgi functions required for vacuolar protein sorting and efficient alpha-factor prohormone maturation. PUBMED:1840635 EPMC:1840635
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This tab holds annotation information from the InterPro database.
InterPro entry IPR007810This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
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Curation and family details
|Seed source:||Pfam-B_6057 (release 7.7)|
|Number in seed:||31|
|Number in full:||318|
|Average length of the domain:||145.80 aa|
|Average identity of full alignment:||26 %|
|Average coverage of the sequence by the domain:||15.40 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||9|
|Download:||download the raw HMM for this family|
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