Summary: Protein of unknown function (DUF1585)
Protein of unknown function (DUF1585) Provide feedback
A conserved sequence region at the C terminus of several cytochrome-like proteins in Rhodopirellula baltica.
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR011478
This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain INTERPRO, INTERPRO, INTERPRO and INTERPRO.
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
- the number of residues in the sequence
- the Pfam graphic itself.
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We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
- the alignment generated by searching the sequence database using the HMM
- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
- alignment generated by searching the NCBI sequence database using the family HMM
- alignment generated by searching the metagenomics sequence database using the family HMM
You can see the alignments as HTML or in three different sequence viewers:
- Pfam viewer
- an HTML-based viewer that uses DAS to retrieve alignment fragments on request
1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
|Seed source:||Blast clustering of Pirellula proteome|
|Number in seed:||63|
|Number in full:||199|
|Average length of the domain:||75.30 aa|
|Average identity of full alignment:||25 %|
|Average coverage of the sequence by the domain:||9.62 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||6|
|Download:||download the raw HMM for this family|
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- 0 sequences
- 0 species
How the sunburst is generated
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The tree shows the occurrence of this domain across different species. More...
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