Summary: Fungal tRNA ligase phosphodiesterase domain
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Fungal tRNA ligase phosphodiesterase domain Provide feedback
This domain is found in fungal tRNA ligases and has cyclic phosphodiesterase activity . tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR015965
The mapping between Pfam and Gene Ontology is provided by InterPro. If you use this data please cite InterPro.
|Molecular function||ATP binding (GO:0005524)|
|RNA ligase (ATP) activity (GO:0003972)|
|Biological process||tRNA splicing, via endonucleolytic cleavage and ligation (GO:0006388)|
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Curation and family details
|Seed source:||Pfam-B_49998 (release 17.0)|
|Author:||Mistry J, Wood V|
|Number in seed:||19|
|Number in full:||168|
|Average length of the domain:||219.00 aa|
|Average identity of full alignment:||25 %|
|Average coverage of the sequence by the domain:||29.09 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||6|
|Download:||download the raw HMM for this family|
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