Summary: Nucleoporin protein Ndc1-Nup
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Nucleoporin protein Ndc1-Nup Provide feedback
Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body. It consists of six transmembrane segments, three lumenal loops, both concentrated at the N-terminus and cytoplasmic domains largely at the C-terminus, all of which are well conserved.
Stavru F, Hulsmann BB, Spang A, Hartmann E, Cordes VC, Gorlich D; , J Cell Biol. 2006;173:509-519.: NDC1: a crucial membrane-integral nucleoporin of metazoan nuclear pore complexes. PUBMED:16702233 EPMC:16702233
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR019049
Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body. It consists of six transmembrane segments, three luminal loops, both concentrated at the N terminus and cytoplasmic domains largely at the C terminus, all of which are well conserved.
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Curation and family details
|Seed source:||Wood, V|
|Author:||Wood V, Coggill P|
|Number in seed:||34|
|Number in full:||331|
|Average length of the domain:||466.90 aa|
|Average identity of full alignment:||18 %|
|Average coverage of the sequence by the domain:||88.01 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||5|
|Download:||download the raw HMM for this family|
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