HMMER3/b [3.0 | March 2010] NAME RII_binding_1 ACC PF10522.4 DESC RII binding domain LENG 18 ALPH amino RF no CS no MAP yes DATE Fri Oct 5 23:31:09 2012 NSEQ 14 EFFN 14.000000 CKSUM 3845171212 GA 14.40 14.40; TC 14.40 14.40; NC 14.30 14.30; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.5460 0.75629 STATS LOCAL VITERBI -6.6010 0.75629 STATS LOCAL FORWARD -2.9776 0.75629 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.92801 5.84985 3.91022 2.37627 4.10295 4.14656 4.63716 2.30452 3.16231 2.39183 4.06496 3.27807 4.43240 2.73090 3.10136 2.57935 2.88975 1.97019 6.56207 4.27081 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.00000 * 1 3.61234 6.12033 2.54975 1.57300 5.46404 4.38426 4.57297 4.94921 3.30877 1.86864 5.16157 3.85209 2.86635 2.69760 2.35089 2.61129 2.10334 4.51028 6.55366 5.14321 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 2 2.63982 5.18646 5.75727 2.89419 4.27206 4.99318 5.33076 1.51634 4.94101 1.19813 2.36271 5.14741 2.71424 5.07595 4.95960 4.30588 4.04744 2.43530 5.82450 4.65026 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 3 3.86517 6.37019 3.87613 0.85014 5.71528 4.54425 4.78874 2.74352 2.11966 4.67291 5.42866 2.32903 4.98255 3.89755 4.01592 1.99848 4.10238 4.76417 6.80126 5.38867 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 4 3.61649 6.10683 3.87251 1.04085 2.21711 4.39203 4.57799 4.92472 2.50695 4.40816 5.14971 3.86258 4.78514 2.69933 2.74510 2.73671 2.71967 4.49395 6.54246 2.91060 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 5 1.83166 5.24658 5.00595 4.42530 4.35771 4.78814 5.07748 2.27484 2.29909 3.44468 4.35967 4.69893 5.16032 2.77758 4.55974 4.06351 2.07322 1.68175 5.85330 2.10947 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 6 0.37225 5.93999 6.61770 6.63492 6.81301 4.75698 7.02578 6.15542 6.48323 5.99102 6.75129 5.72301 5.64430 6.50776 6.38745 1.68817 4.63419 2.50042 8.18529 7.19555 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 7 1.71946 5.95316 4.08374 3.53436 2.37433 2.76939 4.75621 4.79143 3.53115 4.35243 5.13443 1.79156 4.89898 3.88478 2.35097 1.74442 2.69483 4.40351 6.54996 5.19247 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 8 2.63194 6.11954 2.56586 3.30606 5.46445 4.38573 4.57161 4.94907 2.13585 2.80558 5.16063 3.85364 4.77906 2.21504 1.34554 2.49973 2.36077 4.51018 6.55173 5.14260 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 9 5.19020 6.31250 7.36243 6.91796 5.18130 6.99146 7.79025 1.19238 6.92540 0.77911 4.85428 7.17725 6.98383 6.94883 7.01212 6.50623 5.43470 1.60109 7.61207 6.59609 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 10 4.47522 5.74013 6.55353 6.02545 5.07612 5.89201 6.43741 1.94512 5.89281 2.40760 4.92965 6.07468 6.19815 6.08760 5.96980 2.60703 2.71719 0.55428 6.86917 5.66465 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 11 2.49122 6.13038 2.73969 1.86244 5.47629 4.38527 4.57518 4.96340 2.40067 3.01981 5.17110 2.67645 4.78085 1.81155 3.80472 1.54287 3.84752 4.52152 6.56227 5.14990 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 12 2.15193 6.00195 3.92903 2.40310 5.29262 2.45420 4.63240 4.74030 3.39739 2.12233 5.06196 1.57765 4.82723 1.87095 3.87871 3.63279 3.87270 2.84426 6.47324 5.09873 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 13 1.99902 6.06724 7.11360 6.73498 5.70982 6.54611 7.80673 2.29194 6.75457 4.04860 5.36210 6.85130 6.82844 7.09705 6.98585 6.05205 5.16894 0.33233 8.04482 6.74840 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 14 4.64761 5.94586 6.55172 6.01190 4.81095 5.94613 6.39380 0.41132 5.74011 2.06816 4.62851 6.10714 6.22024 2.85350 5.79610 5.32407 2.77571 3.42578 6.75223 5.64148 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 15 1.64580 6.06627 3.89744 2.53982 5.38814 4.40532 4.59511 4.85504 3.33576 2.30164 5.11629 3.88491 4.79893 1.32048 2.69382 2.66844 2.55952 4.44506 6.51538 5.12281 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 16 1.84664 5.81734 4.06285 1.57364 5.04844 4.48399 4.69430 4.45792 3.50127 2.62460 2.16832 4.02568 4.87614 1.82253 3.95853 3.69305 2.26433 4.14517 6.32894 5.00201 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 17 0.43935 5.93702 6.61436 6.62272 6.77176 4.76071 7.01359 6.04275 6.47057 5.93113 6.70880 5.72274 5.64575 6.49828 6.37831 1.68296 4.63317 2.07775 8.15640 7.15861 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00279 6.27972 7.00207 0.61958 0.77255 0.48576 0.95510 18 3.89738 5.45580 5.13264 4.49046 4.58914 4.91990 2.66971 2.00716 2.71759 3.65138 4.56842 4.77041 5.28258 4.53541 2.13767 4.21303 2.21378 1.02627 6.04035 4.84927 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00188 6.27881 * 0.61958 0.77255 0.00000 * //