Summary: Ultra-violet resistance protein B
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Ultra-violet resistance protein B Provide feedback
This domain family is found in bacteria, archaea and eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00271 PF02151 PF04851. There are two conserved sequence motifs: YAD and RRR. This family is the C terminal region of the UvrB protein which conveys mutational resistance against UV light to various different species.
Black CG, Fyfe JA, Davies JK;, J Bacteriol. 1995;177:1952-1958.: A promoter associated with the neisserial repeat can be used to transcribe the uvrB gene from Neisseria gonorrhoeae. PUBMED:7721686 EPMC:7721686
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR024759
This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species [PUBMED:7721686]. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.
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This example describes an architecture with one
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Curation and family details
|Number in seed:||509|
|Number in full:||4463|
|Average length of the domain:||43.90 aa|
|Average identity of full alignment:||56 %|
|Average coverage of the sequence by the domain:||6.48 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||3|
|Download:||download the raw HMM for this family|
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For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the UvrB domain has been found. There are 11 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.
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