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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
C-C_Bond_Lyase PF15617 Family 70 344 324.30 42 93.39 New C-C_Bond_Lyase of the TIM-Barrel fold
c-SKI_SMAD_bind PF08782 Domain 7 320 92.80 47 15.16 Changed c-SKI Smad4 binding domain
C-term_anchor PF13461 Repeat 178 2550 59.40 35 18.55 Changed Cell-wall surface anchor repeat
C1-set PF07654 Domain 128 16594 82.80 38 31.24 Changed Immunoglobulin C1-set domain
C1q PF00386 Domain 46 2356 122.60 27 35.37 Changed C1q domain
C1_1 PF00130 Domain 46 6123 52.60 31 8.26 Changed Phorbol esters/diacylglycerol binding domain (C1 domain)
C1_2 PF03107 Domain 90 558 31.30 34 11.07 Changed C1 domain
C1_3 PF07649 Domain 194 800 29.60 35 11.59 Changed C1-like domain
C1_4 PF07975 Domain 16 268 52.60 46 12.05 Changed TFIIH C1-like domain
C2 PF00168 Domain 382 23398 86.10 20 17.18 Changed C2 domain
C2-set PF05790 Domain 27 320 77.80 26 27.95 Changed Immunoglobulin C2-set domain
C2-set_2 PF08205 Domain 33 3971 86.30 17 19.89 Changed CD80-like C2-set immunoglobulin domain
C4 PF01413 Domain 26 1172 108.20 49 15.42 Changed C-terminal tandem repeated domain in type 4 procollagen
C5-epim_C PF06662 Family 18 182 180.00 42 36.94 Changed D-glucuronyl C5-epimerase C-terminus
C6 PF01681 Family 35 172 94.00 21 48.65 Changed C6 domain
C6_DPF PF10170 Domain 8 86 90.60 44 66.03 Changed Cysteine-rich domain
C8 PF08742 Domain 131 2979 74.30 30 11.28 Changed C8 domain
C9orf72-like PF15019 Family 18 93 237.90 45 51.15 New C9orf72-like protein family
Caa3_CtaG PF09678 Family 106 1028 237.70 26 56.82 Changed Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
CAAD PF14159 Domain 96 289 86.30 31 38.78 Changed CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
CAAP1 PF15335 Family 14 90 61.70 53 16.01 New Caspase activity and apoptosis inhibitor 1
CaATP_NAI PF12515 Family 28 163 46.50 48 4.79 Changed Ca2+-ATPase N terminal autoinhibitory domain
CABIT PF12736 Domain 28 405 231.50 21 49.09 Changed Cell-cycle sustaining, positive selection,
CABS1 PF15367 Family 9 23 382.60 67 87.66 New Calcium-binding and spermatid-specific protein 1
Cache_1 PF02743 Domain 19 6574 78.30 20 11.74 Changed Cache domain
Cache_2 PF08269 Domain 34 2356 91.30 24 17.47 Changed Cache domain
Cache_3 PF14827 Domain 258 2633 115.40 31 21.38 New Sensory domain of two-component sensor kinase
CactinC_cactus PF09732 Domain 19 306 124.40 58 22.10 Changed Cactus-binding C-terminus of cactin protein
Cactin_mid PF10312 Family 22 283 178.40 35 31.47 Changed Conserved mid region of cactin
Cad PF03596 Family 6 922 185.00 42 92.57 Changed Cadmium resistance transporter
Cadherin PF00028 Family 57 41902 93.10 24 44.86 Changed Cadherin domain
Cadherin-like PF12733 Domain 218 661 93.00 22 12.69 Changed Cadherin-like beta sandwich domain
Cadherin_2 PF08266 Domain 77 2331 83.80 38 9.36 Changed Cadherin-like
Cadherin_C PF01049 Family 64 1652 136.60 35 14.31 Changed Cadherin cytoplasmic region
Cadherin_pro PF08758 Domain 52 421 82.30 30 10.07 Changed Cadherin prodomain like
Caenor_Her-1 PF09232 Domain 2 15 114.70 37 68.76 Changed Caenorhabditis elegans Her-1
Caerin_1 PF07440 Family 2 28 23.90 85 64.33 Changed Caerin 1 protein
CAF-1_p150 PF11600 Family 13 305 187.60 19 26.44 Changed Chromatin assembly factor 1 complex p150 subunit, N-terminal
CAF-1_p60_C PF15512 Domain 16 48 156.60 48 29.99 New Chromatin assembly factor complex 1 subunit p60, C-terminal
CAF1 PF04857 Family 27 1134 271.30 26 67.58 Changed CAF1 family ribonuclease
CAF1-p150_C2 PF15539 Domain 4 69 238.00 41 28.17 New CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
CAF1-p150_N PF15557 Domain 4 49 203.20 44 23.92 New CAF1 complex subunit p150, region binding to PCNA
CAF1A PF12253 Family 32 308 80.70 39 11.05 Changed Chromatin assembly factor 1 subunit A
CAF1C_H4-bd PF12265 Family 93 1002 71.70 33 16.24 Changed Histone-binding protein RBBP4 or subunit C of CAF1 complex
Cag12 PF13117 Family 13 185 109.40 36 56.11 Changed Cag pathogenicity island protein Cag12
CagA PF03507 Family 4 2702 133.20 62 54.67 Changed CagA exotoxin
CAGE1 PF15066 Family 4 63 325.00 48 63.21 New Cancer-associated gene protein 1 family
CagE_TrbE_VirB PF03135 Family 15 1506 190.30 20 25.11 Changed CagE, TrbE, VirB family, component of type IV transporter system
CagX PF03524 Family 150 1580 205.60 22 75.21 Changed Conjugal transfer protein
CagY_I PF14585 Repeat 7 210 62.60 78 9.99 New CagY type 1 repeat
CagY_M PF07337 Repeat 13 2220 32.50 51 48.99 Changed DC-EC Repeat
CagZ PF09053 Domain 3 75 195.10 97 99.99 Changed CagZ
CaKB PF03185 Family 10 225 174.90 38 79.42 Changed Calcium-activated potassium channel, beta subunit
Calcipressin PF04847 Family 9 405 174.90 37 76.73 Changed Calcipressin
Calci_bind_CcbP PF11535 Family 17 53 97.80 26 66.48 Changed Calcium binding
CALCOCO1 PF07888 Family 3 312 340.20 34 63.29 Changed Calcium binding and coiled-coil domain (CALCOCO1) like
Calcyon PF06387 Family 3 132 169.40 55 98.17 Changed D1 dopamine receptor-interacting protein (calcyon)
Calc_CGRP_IAPP PF00214 Family 13 313 106.10 29 83.67 Changed Calcitonin / CGRP / IAPP family
Caldesmon PF02029 Family 10 234 296.00 32 83.25 Changed Caldesmon
Caleosin PF05042 Family 9 275 155.30 43 68.07 Changed Caleosin related protein
Calici_coat PF00915 Family 11 9404 130.20 53 60.76 Changed Calicivirus coat protein
Calici_coat_C PF08435 Family 29 2058 178.20 60 47.19 Changed Calicivirus coat protein C-terminal
Calici_MSP PF05752 Family 14 126 165.00 49 99.90 Changed Calicivirus minor structural protein
Calici_PP_N PF08405 Family 6 386 351.20 73 21.29 Changed Viral polyprotein N-terminal
Calmodulin_bind PF07887 Family 11 283 252.30 37 49.84 Changed Calmodulin binding protein-like
Calpain_III PF01067 Domain 91 1670 140.30 28 20.07 Changed Calpain large subunit, domain III
Calpain_inhib PF00748 Family 24 632 125.40 35 73.52 Changed Calpain inhibitor
Calponin PF00402 Repeat 5 1168 25.20 59 20.32 Changed Calponin family repeat
Calreticulin PF00262 Family 68 1064 294.80 45 68.78 Changed Calreticulin family
Calsarcin PF05556 Family 14 220 230.20 35 93.44 Changed Calcineurin-binding protein (Calsarcin)
Calsequestrin PF01216 Family 3 208 299.80 55 93.70 Changed Calsequestrin
Calx-beta PF03160 Domain 32 5074 97.30 27 17.36 Changed Calx-beta domain
CaM-KIIN PF15170 Family 5 59 72.70 70 98.10 New Calcium/calmodulin-dependent protein kinase II inhibitor
CaMBD PF02888 Family 5 334 74.40 61 13.92 Changed Calmodulin binding domain
CaMKII_AD PF08332 Family 7 782 118.40 52 32.17 Changed Calcium/calmodulin dependent protein kinase II Association
CAML PF14963 Family 5 67 205.50 50 78.87 New Calcium signal-modulating cyclophilin ligand
Campylo_MOMP PF05538 Family 2 514 274.10 49 99.06 Changed Campylobacter major outer membrane protein
CAMP_factor PF07373 Family 9 517 226.20 41 81.27 Changed CAMP factor (Cfa)
CamS PF07537 Family 7 766 278.80 36 84.01 Changed CamS sex pheromone cAM373 precursor
CAMSAP_CH PF11971 Domain 27 382 79.90 31 5.82 Changed CAMSAP CH domain
CAMSAP_CKK PF08683 Domain 14 287 125.80 57 10.32 Changed Microtubule-binding calmodulin-regulated spectrin-associated
CaM_bdg_C0 PF10562 Domain 4 144 28.80 70 3.30 Changed Calmodulin-binding domain C0 of NMDA receptor NR1 subunit
CaM_binding PF07839 Domain 19 140 105.70 30 21.15 Changed Plant calmodulin-binding domain
Candida_ALS PF05792 Repeat 189 1619 32.10 46 32.08 Changed Candida agglutinin-like (ALS)
Candida_ALS_N PF11766 Domain 24 165 240.80 38 24.30 Changed Cell-wall agglutinin N-terminal ligand-sugar binding
CAP PF00188 Domain 98 6534 123.50 18 43.36 Changed Cysteine-rich secretory protein family
CAP-ZIP_m PF15255 Family 19 184 131.50 38 14.78 New WASH complex subunit CAP-Z interacting, central region
CAP160 PF07918 Repeat 7 30 26.40 67 7.17 Changed CAP160 repeat
CAP18_C PF12153 Domain 11 48 28.10 49 16.48 Changed LPS binding domain of CAP18 (C terminal)
CAP59_mtransfer PF11735 Family 37 382 212.70 30 50.86 Changed Cryptococcal mannosyltransferase 1
Caprin-1_C PF12287 Family 6 155 264.70 48 39.45 Changed Cytoplasmic activation/proliferation-associated protein-1 C term
Capsid-VNN PF11729 Family 3 443 193.10 74 99.75 Changed nodavirus capsid protein
Capsid_NCLDV PF04451 Family 37 809 166.00 33 55.42 Changed Large eukaryotic DNA virus major capsid protein
Capsule_synth PF05159 Family 23 1766 256.20 23 64.77 Changed Capsule polysaccharide biosynthesis protein
Caps_assemb_Wzi PF14052 Family 92 390 444.60 21 90.03 Changed Capsule assembly protein Wzi
Caps_synth PF05704 Family 28 400 240.00 21 70.01 Changed Capsular polysaccharide synthesis protein
Caps_synth_CapC PF14102 Family 31 208 120.40 43 66.61 Changed Capsule biosynthesis CapC
Caps_synth_GfcC PF06251 Family 17 1054 216.40 40 55.92 Changed Capsule biosynthesis GfcC
CAP_assoc_N PF14504 Domain 63 757 139.40 32 41.03 New CAP-associated N-terminal
CAP_C PF08603 Family 35 461 154.60 41 33.01 Changed Adenylate cyclase associated (CAP) C terminal
CAP_GLY PF01302 Domain 146 2400 68.20 38 10.48 Changed CAP-Gly domain
CAP_N PF01213 Family 6 489 263.70 35 60.01 Changed Adenylate cyclase associated (CAP) N terminal
Cap_synth_GfcB PF11102 Family 39 859 193.80 52 91.11 Changed Group 4 capsule polysaccharide formation lipoprotein gfcB
Carboxyl_trans PF01039 Family 34 11662 323.30 27 68.57 Changed Carboxyl transferase domain
CarboxypepD_reg PF13620 Domain 622 6052 80.30 21 11.43 Changed Carboxypeptidase regulatory-like domain
CarbpepA_inh PF02977 Domain 7 15 45.30 45 51.05 Changed Carboxypeptidase A inhibitor
Carbpep_Y_N PF05388 Family 6 94 107.80 26 20.30 Changed Carboxypeptidase Y pro-peptide
Carb_anhydrase PF00194 Domain 14 3112 215.10 26 65.40 Changed Eukaryotic-type carbonic anhydrase
Carb_bind PF10645 Domain 5 22 52.20 46 19.55 Changed Carbohydrate binding
Carb_kinase PF01256 Family 9 4484 239.10 30 56.40 Changed Carbohydrate kinase
Carcinustatin PF08261 Family 2 2 8.00 88 2.84 Changed Carcinustatin peptide
CARD PF00619 Domain 60 1660 84.60 21 14.74 Changed Caspase recruitment domain
CARDB PF07705 Domain 72 1259 105.20 19 17.15 Changed CARDB
CarD_CdnL_TRCF PF02559 Family 152 5749 101.50 33 11.35 Changed CarD-like/TRCF domain
Carla_C4 PF01623 Family 10 194 89.70 45 82.40 Changed Carlavirus putative nucleic acid binding protein
CARM1 PF11531 Family 3 78 91.60 59 17.53 Changed Coactivator-associated arginine methyltransferase 1 N terminal
Carmo_coat_C PF08462 Family 8 62 98.80 70 28.49 Changed Carmovirus coat protein
Carn_acyltransf PF00755 Family 17 1813 442.50 26 79.93 Changed Choline/Carnitine o-acyltransferase
Carot_N PF09150 Domain 8 95 155.00 45 65.57 Changed Orange carotenoid protein, N-terminal
CART PF06373 Family 9 78 70.40 66 65.26 Changed Cocaine and amphetamine regulated transcript protein (CART)
Cas1_AcylT PF07779 Domain 8 235 389.60 33 62.91 Changed 10 TM Acyl Transferase domain found in Cas1p
Cas6 PF09559 Family 10 43 199.20 32 90.31 Changed Cas6 Crispr
Casc1 PF12366 Family 25 204 216.40 19 39.55 Changed Cancer susceptibility candidate 1
Casein PF00363 Family 15 200 76.40 34 45.23 Changed Casein
Casein_kappa PF00997 Family 9 256 137.40 73 97.48 Changed Kappa casein
CASP_C PF08172 Family 29 261 229.80 33 35.98 Changed CASP C terminal
Cass2 PF14526 Domain 24 758 145.20 18 79.49 New Integron-associated effector binding protein
Cast PF10174 Family 7 395 443.00 33 71.08 Changed RIM-binding protein of the cytomatrix active zone
Cas_APE2256 PF09651 Family 28 119 135.30 23 39.62 Changed CRISPR-associated protein (Cas_APE2256)
Cas_Cas02710 PF09670 Family 10 109 269.30 16 69.90 Changed CRISPR-associated protein (Cas_Cas02710)
Cas_Cas1 PF01867 Family 140 3143 209.90 20 81.31 Changed CRISPR associated protein Cas1
Cas_Cas2CT1978 PF09707 Family 33 643 83.70 58 72.52 Changed CRISPR-associated protein (Cas_Cas2CT1978)
Cas_Cas4 PF01930 Family 57 1113 163.70 22 56.47 Changed Domain of unknown function DUF83
Cas_Cas5d PF09704 Family 102 1346 210.50 18 87.80 Changed CRISPR-associated protein (Cas_Cas5)
Cas_Cas6 PF01881 Family 46 464 148.10 20 61.04 Changed CRISPR associated protein Cas6
Cas_Cmr3 PF09700 Family 33 217 321.60 16 88.35 Changed CRISPR-associated protein (Cas_Cmr3)
Cas_Cmr5 PF09701 Family 25 134 120.80 23 88.87 Changed CRISPR-associated protein (Cas_Cmr5)
Cas_Csa4 PF09703 Family 6 13 355.20 23 95.95 Changed CRISPR-associated protein (Cas_Csa4)
Cas_Csa5 PF09702 Family 5 26 100.10 43 74.66 Changed CRISPR-associated protein (Cas_Csa5)
Cas_Csd1 PF09709 Family 36 393 525.50 25 96.60 Changed CRISPR-associated protein (Cas_Csd1)
CAS_CSE1 PF03378 Family 16 387 387.00 29 44.71 Changed CAS/CSE protein, C-terminus
Cas_Csm6 PF09659 Family 4 211 273.70 26 89.77 Changed CRISPR-associated protein (Cas_Csm6)
Cas_Csn2 PF09711 Family 5 132 185.20 44 84.50 Changed CRISPR-associated protein (Cas_Csn2)
Cas_csx3 PF09620 Family 7 37 78.50 31 36.24 Changed CRISPR-associated protein (Cas_csx3)
Cas_Csx8 PF09657 Family 3 31 380.60 38 92.76 Changed CRISPR-associated protein Csx8 (Cas_Csx8)
Cas_Csx9 PF09658 Family 3 8 349.00 46 88.05 Changed CRISPR-associated protein (Cas_Csx9)
Cas_Csy1 PF09611 Family 18 182 345.90 35 83.41 Changed CRISPR-associated protein (Cas_Csy1)
Cas_Csy2 PF09614 Family 25 219 266.80 33 80.18 Changed CRISPR-associated protein (Cas_Csy2)
Cas_Csy3 PF09615 Family 23 219 318.40 48 97.09 Changed CRISPR-associated protein (Cas_Csy3)
Cas_Csy4 PF09618 Family 32 230 181.10 33 97.59 Changed CRISPR-associated protein (Cas_Csy4)
Cas_CT1975 PF09344 Family 25 679 337.10 44 96.95 Changed CT1975-like protein
Cas_CXXC_CXXC PF09706 Domain 10 84 64.70 28 12.16 Changed CRISPR-associated protein (Cas_CXXC_CXXC)
Cas_DxTHG PF09455 Family 44 268 350.30 14 81.01 Changed CRISPR-associated (Cas) DxTHG family
Cas_GSU0053 PF09617 Family 4 71 173.40 26 46.68 Changed CRISPR-associated protein GSU0053 (Cas_GSU0053)
Cas_GSU0054 PF09609 Family 4 90 277.10 14 76.09 Changed CRISPR-associated protein, GSU0054 family (Cas_GSU0054)
Cas_NE0113 PF09623 Family 17 107 188.90 25 58.63 Changed CRISPR-associated protein NE0113 (Cas_NE0113)
Cas_TM1802 PF09484 Family 16 118 501.70 18 87.54 Changed CRISPR-associated protein TM1802 (cas_TM1802)
Cas_VVA1548 PF09652 Domain 6 31 91.80 41 51.20 Changed Putative CRISPR-associated protein (Cas_VVA1548)
CAT PF00302 Domain 12 768 191.50 33 93.28 Changed Chloramphenicol acetyltransferase
Catalase PF00199 Domain 121 5600 346.50 44 69.89 Changed Catalase
Catalase-rel PF06628 Family 343 4316 67.50 25 12.26 Changed Catalase-related immune-responsive
Cathelicidins PF00666 Family 8 193 65.00 50 41.10 Changed Cathelicidin
CathepsinC_exc PF08773 Domain 10 167 106.90 39 23.58 Changed Cathepsin C exclusion domain
Cation_ATPase_C PF00689 Family 141 8688 180.00 22 19.21 Changed Cation transporting ATPase, C-terminus
Cation_ATPase_N PF00690 Domain 168 9625 66.10 25 7.18 Changed Cation transporter/ATPase, N-terminus
Cation_efflux PF01545 Family 89 12806 268.50 19 81.33 Changed Cation efflux family
CATSPERB PF15149 Family 5 43 462.60 52 59.02 New Cation channel sperm-associated protein subunit beta protein family
CATSPERD PF15020 Family 7 107 504.10 29 86.63 New Cation channel sperm-associated protein subunit delta
CATSPERG PF15064 Family 4 89 504.50 38 85.95 New Cation channel sperm-associated protein subunit gamma
CAT_RBD PF03123 Domain 15 2777 57.80 36 21.19 Changed CAT RNA binding domain
Caudal_act PF04731 Family 14 144 127.30 37 51.59 Changed Caudal like protein activation region
Caudo_TAP PF02413 Family 73 2529 118.40 33 75.29 Changed Caudovirales tail fibre assembly protein
Cauli_AT PF03233 Family 6 35 136.50 49 73.75 Changed Aphid transmission protein
Cauli_DNA-bind PF03310 Family 3 30 102.50 43 89.24 Changed Caulimovirus DNA-binding protein
Cauli_VI PF01693 Family 212 1222 43.80 36 16.86 Changed Caulimovirus viroplasmin
Caveolin PF01146 Family 21 305 143.40 45 85.68 Changed Caveolin
CAV_VP3 PF04771 Family 7 93 108.30 94 99.84 Changed Chicken anaemia virus VP-3 protein
Ca_chan_IQ PF08763 Domain 25 724 34.30 52 1.83 Changed Voltage gated calcium channel IQ domain
Ca_hom_mod PF14798 Family 30 292 231.90 33 77.89 New Calcium homeostasis modulator
CBAH PF02275 Domain 8 2070 285.70 24 86.92 Changed Linear amide C-N hydrolases, choloylglycine hydrolase family
CbbQ_C PF08406 Family 81 795 86.40 31 30.94 Changed CbbQ/NirQ/NorQ C-terminal
CBF PF03914 Family 111 959 173.80 25 23.17 Changed CBF/Mak21 family
CBFB_NFYA PF02045 Family 25 558 56.50 67 18.95 Changed CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
CBFD_NFYB_HMF PF00808 Domain 28 2710 64.60 30 31.69 Changed Histone-like transcription factor (CBF/NF-Y) and archaeal histone
CBFNT PF08143 Domain 16 125 66.10 44 21.96 Changed CBFNT (NUC161) domain
CBF_beta PF02312 Family 8 133 147.10 52 84.21 Changed Core binding factor beta subunit
CbiA PF01656 Domain 79 20629 208.60 17 65.21 Changed CobQ/CobB/MinD/ParA nucleotide binding domain
CbiC PF02570 Family 155 1640 196.50 41 85.28 Changed Precorrin-8X methylmutase
CbiD PF01888 Family 6 1191 250.80 40 67.94 Changed CbiD
CbiG_C PF01890 Domain 204 1400 120.40 30 34.00 Changed Cobalamin synthesis G C-terminus
CbiG_mid PF11761 Domain 143 622 88.40 20 21.68 Changed Cobalamin biosynthesis central region
CbiG_N PF11760 Domain 150 1206 83.40 43 18.54 Changed Cobalamin synthesis G N-terminal
CbiJ PF02571 Family 90 1417 240.60 29 86.82 Changed Precorrin-6x reductase CbiJ/CobK
CbiK PF06180 Family 8 718 247.40 37 87.61 Changed Cobalt chelatase (CbiK)
CbiM PF01891 Family 154 1775 202.70 27 84.38 Changed Cobalt uptake substrate-specific transmembrane region
CbiN PF02553 Family 12 603 71.60 44 67.62 Changed Cobalt transport protein component CbiN
CbiQ PF02361 Family 21 6688 211.40 20 79.22 Changed Cobalt transport protein
CbiX PF01903 Family 76 2846 103.40 22 64.24 Changed CbiX
CbiZ PF01955 Family 69 333 191.00 28 66.29 Changed Adenosylcobinamide amidohydrolase
CblD PF07434 Family 5 262 303.90 54 91.10 Changed CblD like pilus biogenesis initiator
Cbl_N PF02262 Domain 3 228 122.10 60 17.48 Changed CBL proto-oncogene N-terminal domain 1
Cbl_N2 PF02761 Domain 5 227 81.50 68 11.39 Changed CBL proto-oncogene N-terminus, EF hand-like domain
Cbl_N3 PF02762 Domain 4 215 84.00 81 11.55 Changed CBL proto-oncogene N-terminus, SH2-like domain
CBM-like PF14683 Domain 56 304 176.50 27 28.84 New Polysaccharide lyase family 4, domain III
CBM27 PF09212 Domain 2 51 171.90 24 23.72 Changed Carbohydrate binding module 27
CBM49 PF09478 Domain 28 310 82.10 25 20.10 Changed Carbohydrate binding domain CBM49
CBM_1 PF00734 Domain 133 1334 28.80 51 7.32 Changed Fungal cellulose binding domain
CBM_10 PF02013 Domain 92 276 34.80 41 10.69 Changed Cellulose or protein binding domain
CBM_11 PF03425 Family 15 149 177.60 16 25.80 Changed Carbohydrate binding domain (family 11)
CBM_14 PF01607 Domain 209 6920 53.80 23 23.27 Changed Chitin binding Peritrophin-A domain
CBM_15 PF03426 Domain 2 3 160.30 69 26.24 Changed Carbohydrate binding domain (family 15)
CBM_17_28 PF03424 Domain 7 48 188.40 35 39.07 Changed Carbohydrate binding domain (family 17/28)
CBM_19 PF03427 Domain 2 39 63.00 34 12.39 Changed Carbohydrate binding domain (family 19)
CBM_2 PF00553 Domain 17 1472 96.90 30 17.38 Changed Cellulose binding domain
CBM_20 PF00686 Family 101 1301 93.70 23 15.09 Changed Starch binding domain
CBM_21 PF03370 Family 75 714 108.30 31 22.53 Changed Putative phosphatase regulatory subunit
CBM_25 PF03423 Domain 30 440 84.90 26 18.88 Changed Carbohydrate binding domain (family 25)
CBM_3 PF00942 Domain 29 651 83.10 27 12.10 Changed Cellulose binding domain
CBM_48 PF02922 Domain 59 8560 85.90 27 11.95 Changed Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
CBM_4_9 PF02018 Domain 47 1727 134.50 15 21.89 Changed Carbohydrate binding domain
CBM_5_12 PF02839 Family 135 2927 42.20 30 7.84 Changed Carbohydrate binding domain
CBM_5_12_2 PF14600 Domain 5 106 59.30 49 6.53 New Cellulose-binding domain
CBM_6 PF03422 Family 41 1755 121.80 21 17.74 Changed Carbohydrate binding module (family 6)
CBM_X PF06204 Family 57 1056 63.10 32 5.20 Changed Putative carbohydrate binding domain
CBM_X2 PF03442 Domain 41 261 84.50 29 12.79 Changed Carbohydrate binding domain X2
CBP PF12192 Domain 5 12 57.20 47 25.99 Changed Fungal calcium binding protein
CBP4 PF07960 Family 18 129 115.40 33 85.79 Changed CBP4
CBS PF00571 Domain 850 77225 57.10 19 26.04 Changed CBS domain
CbtA PF09490 Family 25 417 223.70 30 92.26 Changed Probable cobalt transporter subunit (CbtA)
CbtB PF09489 Family 20 220 56.40 39 87.85 Changed Probable cobalt transporter subunit (CbtB)
CC PF04942 Domain 29 101 35.30 31 20.03 Changed CC domain
CC2D2AN-C2 PF15625 Family 20 138 160.10 33 11.78 New CC2D2A N-terminal C2 domain
CCAP PF11105 Family 4 47 102.10 32 82.57 Changed Arthropod cardioacceleratory peptide 2a
CCD PF07860 Family 2 5 110.40 83 6.06 Changed WisP family C-Terminal Region
CcdA PF07362 Family 25 640 67.90 35 86.53 Changed Post-segregation antitoxin CcdA
CcdB PF01845 Domain 12 537 98.20 43 98.60 Changed CcdB protein
CCDC-167 PF15188 Family 11 60 83.00 45 80.04 New Coiled-coil domain-containing protein 167
CCDC14 PF15254 Family 11 77 449.60 39 86.45 New Coiled-coil domain-containing protein 14
CCDC142 PF14923 Family 6 80 357.80 33 57.08 New Coiled-coil protein 142
CCDC144C PF14915 Family 17 241 241.80 46 28.85 New CCDC144C protein coiled-coil region
CCDC155 PF14662 Domain 15 48 163.10 59 29.74 New Coiled-coil region of CCDC155
CCDC32 PF14989 Family 14 92 137.80 41 74.06 New Coiled-coil domain containing 32
CCDC50_N PF15295 Family 11 129 127.30 47 30.86 New Coiled-coil domain-containing protein 50 N-terminus
CCDC66 PF15236 Family 19 118 148.20 35 16.22 New Coiled-coil domain-containing protein 66
CCDC71L PF15374 Family 18 76 232.80 33 89.74 New Coiled-coil domain-containing protein 71L
CCDC74_C PF14917 Family 6 31 124.20 59 34.53 New Coiled coil protein 74, C terminal
CCDC84 PF14968 Family 13 109 256.10 32 89.59 New Coiled coil protein 84
CCDC92 PF14916 Family 15 147 59.70 42 20.86 New Coiled-coil domain of unknown function
CCER1 PF15482 Family 7 24 187.80 59 55.95 New Coiled-coil domain-containing glutamate-rich protein family 1
CCG PF02754 Family 61 13777 86.00 20 33.05 Changed Cysteine-rich domain
CcmB PF03379 Family 13 1869 208.50 38 96.40 Changed CcmB protein
CcmD PF04995 Family 96 1201 48.40 37 73.35 Changed Heme exporter protein D (CcmD)
CcmE PF03100 Family 135 1616 131.90 46 83.52 Changed CcmE
CcmH PF03918 Family 177 2053 139.80 38 68.57 Changed Cytochrome C biogenesis protein
CcoS PF03597 Family 127 978 44.60 39 69.38 Changed Cytochrome oxidase maturation protein cbb3-type
CCP_MauG PF03150 Family 173 2309 159.60 36 39.95 Changed Di-haem cytochrome c peroxidase
CCSMST1 PF15013 Family 15 66 74.40 37 49.36 New CCSMST1 family
CCT PF06203 Motif 42 1411 44.30 54 10.78 Changed CCT motif
CCT_2 PF09425 Motif 18 348 26.20 60 10.36 Changed Divergent CCT motif
CD20 PF04103 Family 80 1022 133.70 19 47.50 Changed CD20-like family
CD24 PF14984 Family 5 28 51.80 61 65.88 New CD24 protein
CD34_antigen PF06365 Family 8 185 179.50 35 45.08 Changed CD34/Podocalyxin family
CD36 PF01130 Family 52 1012 355.90 22 82.78 Changed CD36 family
CD4-extracel PF09191 Domain 11 88 105.90 61 25.33 Changed CD4, extracellular
CD45 PF12567 Family 10 83 60.40 47 7.86 Changed Leukocyte receptor CD45
CD47 PF04549 Family 13 120 151.00 44 53.06 Changed CD47 transmembrane region
CD52 PF15116 Family 4 22 44.90 48 65.52 New CAMPATH-1 antigen
CD99L2 PF12301 Family 13 175 141.50 29 62.51 Changed CD99 antigen like protein 2
CDC14 PF08045 Family 13 152 243.70 30 80.45 Changed Cell division control protein 14, SIN component
CDC24 PF06395 Domain 17 130 89.40 42 9.83 Changed CDC24 Calponin
CDC27 PF09507 Family 21 329 344.60 20 88.93 Changed DNA polymerase subunit Cdc27
CDC37_C PF08564 Domain 31 299 91.80 29 21.44 Changed Cdc37 C terminal domain
CDC37_M PF08565 Domain 19 361 181.10 27 44.13 Changed Cdc37 Hsp90 binding domain
CDC37_N PF03234 Domain 21 361 125.20 28 34.41 Changed Cdc37 N terminal kinase binding
CDC45 PF02724 Family 33 405 488.50 28 92.86 Changed CDC45-like protein
CDC48_2 PF02933 Domain 103 1049 68.70 25 9.07 Changed Cell division protein 48 (CDC48), domain 2
CDC48_N PF02359 Domain 120 1252 82.90 27 11.30 Changed Cell division protein 48 (CDC48), N-terminal domain
CDC50 PF03381 Family 76 747 276.90 32 77.38 Changed LEM3 (ligand-effect modulator 3) family / CDC50 family
Cdc6_C PF09079 Domain 83 705 80.40 22 15.43 Changed CDC6, C terminal
CDC73 PF05179 Family 6 336 259.70 26 58.02 Changed RNA pol II accessory factor, Cdc73 family
CdCA1 PF10563 Repeat 18 25 195.00 32 65.05 Changed Cadmium carbonic anhydrase repeat
Cdd1 PF11731 Family 25 195 90.70 35 88.25 Changed Pathogenicity locus
CDH PF02611 Family 24 718 208.40 62 86.80 Changed CDP-diacylglycerol pyrophosphatase
CdhC PF03598 Family 22 260 281.80 45 67.47 Changed CO dehydrogenase/acetyl-CoA synthase complex beta subunit
CdhD PF03599 Family 9 289 303.70 26 74.61 Changed CO dehydrogenase/acetyl-CoA synthase delta subunit
CDI PF02234 Family 43 388 50.30 34 25.13 Changed Cyclin-dependent kinase inhibitor
CDK2AP PF09806 Family 11 192 120.90 43 82.32 Changed Cyclin-dependent kinase 2-associated protein
CDK5_activator PF03261 Family 5 198 210.00 37 88.33 Changed Cyclin-dependent kinase 5 activator protein
CDKN3 PF05706 Family 2 187 132.60 34 62.73 Changed Cyclin-dependent kinase inhibitor 3 (CDKN3)
CDO_I PF05995 Family 8 920 155.50 22 77.31 Changed Cysteine dioxygenase type I
CDP-OH_P_transf PF01066 Family 124 11822 147.30 20 63.29 Changed CDP-alcohol phosphatidyltransferase
CDP-OH_P_tran_2 PF08009 Domain 14 224 38.20 40 13.83 Changed CDP-alcohol phosphatidyltransferase 2
CDRN PF05174 Domain 5 6 55.30 73 18.45 Changed Cysteine-rich D. radiodurans N terminus
CDRT4 PF15213 Family 6 29 134.80 61 89.10 New CMT1A duplicated region transcript 4 protein
CDT1 PF08839 Domain 11 217 153.10 25 25.92 Changed DNA replication factor CDT1 like
CDtoxinA PF03498 Family 10 430 145.30 32 69.60 Changed Cytolethal distending toxin A/C family
CDV3 PF15359 Family 9 101 118.10 51 57.56 New Carnitine deficiency-associated protein 3
CECR6_TMEM121 PF14997 Family 17 120 190.60 31 45.76 New CECR6/TMEM121 family
Cecropin PF00272 Family 28 182 30.50 49 49.92 Changed Cecropin family
CedA PF10729 Family 3 438 79.30 91 97.33 Changed Cell division activator CedA
cEGF PF12662 Domain 733 2407 23.80 49 2.31 Changed Complement Clr-like EGF-like
CelD_N PF02927 Domain 42 561 88.60 25 12.13 Changed N-terminal ig-like domain of cellulase
Cellsynth_D PF03500 Family 2 86 124.90 30 81.81 Changed Cellulose synthase subunit D
Cellulase PF00150 Domain 65 5309 265.90 14 56.85 Changed Cellulase (glycosyl hydrolase family 5)
Cellulase-like PF12876 Family 18 341 89.30 29 19.74 Changed Sugar-binding cellulase-like
Cellulose_synt PF03552 Family 15 1407 403.60 33 73.03 Changed Cellulose synthase
CemA PF03040 Family 53 734 213.40 50 80.88 Changed CemA family
Cementoin PF10511 Family 21 190 16.90 61 22.81 Changed Trappin protein transglutaminase binding domain
CENP-B_dimeris PF09026 Domain 2 32 93.70 69 22.07 Changed Centromere protein B dimerisation domain
CENP-B_N PF04218 Domain 6 534 51.80 26 11.42 Changed CENP-B N-terminal DNA-binding domain
CENP-C_C PF11699 Domain 11 190 84.50 36 12.58 Changed Mif2/CENP-C like
CENP-C_mid PF15620 Family 13 40 248.70 59 31.10 New Centromere assembly component CENP-C middle DNMT3B-binding region
CENP-F_C_Rb_bdg PF10490 Domain 4 55 46.60 67 1.96 Changed Rb-binding domain of kinetochore protein Cenp-F/LEK1
CENP-F_leu_zip PF10473 Domain 30 150 136.90 33 13.97 Changed Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
CENP-F_N PF10481 Domain 10 64 257.70 59 11.94 Changed Cenp-F N-terminal domain
CENP-H PF05837 Domain 16 119 106.20 27 46.14 Changed Centromere protein H (CENP-H)
CENP-I PF07778 Family 5 194 357.00 25 61.93 Changed Mis6
CENP-K PF11802 Family 5 82 210.10 40 81.50 Changed Centromere-associated protein K
CENP-L PF13092 Family 30 154 169.30 25 45.25 Changed Kinetochore complex Sim4 subunit Fta1
CENP-M PF11111 Family 6 65 158.40 50 95.51 Changed Centromere protein M (CENP-M)
CENP-N PF05238 Family 29 193 374.10 25 94.03 Changed Kinetochore protein CHL4 like
CENP-O PF09496 Family 28 202 88.50 31 28.93 Changed Cenp-O kinetochore centromere component
CENP-P PF13096 Family 5 51 127.20 51 60.61 Changed CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
CENP-Q PF13094 Family 38 159 156.00 22 39.12 Changed CENP-Q, a CENPA-CAD centromere complex subunit
CENP-R PF06729 Family 11 37 117.50 55 78.39 Changed Kinetochore component, CENP-R
CENP-S PF15630 Family 46 231 72.70 38 43.37 New Kinetochore component CENP-S
CENP-T PF15511 Family 40 140 349.70 26 78.83 New Centromere kinetochore component CENP-T
CENP-U PF13097 Family 9 57 158.90 39 44.36 Changed CENP-A nucleosome associated complex (NAC) subunit
CENP-W PF15510 Family 6 38 87.60 64 99.88 New Centromere kinetochore component W
CENP-X PF09415 Family 24 170 73.10 33 50.36 Changed CENP-S associating Centromere protein X
CENP_C_N PF15622 Family 10 50 223.80 58 35.09 New Kinetochore assembly subunit CENP-C N-terminal
CEP1-DNA_bind PF09287 Domain 2 7 171.90 28 36.20 Changed CEP-1, DNA binding
CEP170_C PF15308 Family 14 215 476.50 42 45.21 New CEP170 C-terminus
CEP19 PF14933 Family 20 94 149.40 38 67.25 New CEP19-like protein
CEP44 PF15007 Family 13 98 127.10 46 34.24 New Centrosomal spindle body, CEP44
Cep57_CLD PF14073 Domain 8 162 161.50 53 39.03 Changed Centrosome localisation domain of Cep57
Cep57_CLD_2 PF14197 Family 24 78 72.30 30 8.30 Changed Centrosome localisation domain of PPC89
Cep57_MT_bd PF06657 Domain 29 210 76.60 34 11.72 Changed Centrosome microtubule-binding domain of Cep57
CEP76-C2 PF15627 Family 16 82 157.60 51 25.06 New CEP76 C2 domain
Ceramidase PF05875 Family 41 599 225.10 22 87.94 Changed Ceramidase
Ceramidase_alk PF04734 Family 42 810 444.80 26 82.17 Changed Neutral/alkaline non-lysosomal ceramidase
Cerato-platanin PF07249 Family 5 199 112.80 36 70.21 Changed Cerato-platanin
CesA PF11439 Family 2 64 91.60 95 88.57 Changed Type III secretion system filament chaperone CesA
CesT PF05932 Domain 52 1366 112.90 19 76.61 Changed Tir chaperone protein (CesT) family
CfAFP PF05264 Family 4 43 59.70 45 103.26 Changed Choristoneura fumiferana antifreeze protein (CfAFP)
CFC PF09443 Domain 9 108 33.30 52 19.83 Changed Cripto_Frl-1_Cryptic (CFC)
CFEM PF05730 Domain 114 969 66.30 25 23.45 Changed CFEM domain
CFIA_Pcf11 PF11526 Family 10 54 83.30 29 14.42 Changed Subunit of cleavage factor IA Pcf11
CFTR_R PF14396 Domain 9 137 200.10 67 15.53 Changed Cystic fibrosis TM conductance regulator (CFTR), regulator domain
CG-1 PF03859 Domain 15 270 111.00 51 10.85 Changed CG-1 domain
Cg6151-P PF10233 Domain 25 228 109.10 35 61.65 Changed Uncharacterized conserved protein CG6151-P
CGGC PF08821 Domain 31 185 106.50 31 88.27 Changed CGGC domain
CGI-121 PF08617 Domain 46 397 150.60 22 83.16 Changed Kinase binding protein CGI-121
Cgr1 PF03879 Family 18 165 105.60 41 66.03 Changed Cgr1 family
CgtA PF06306 Family 2 149 256.00 46 86.71 Changed Beta-1,4-N-acetylgalactosaminyltransferase (CgtA)
CH PF00307 Domain 194 10780 104.80 20 12.85 Changed Calponin homology (CH) domain
ChaB PF06150 Domain 56 786 63.10 55 67.80 Changed ChaB
ChaC PF04752 Family 15 1371 169.70 37 77.62 Changed ChaC-like protein
CHAD PF05235 Domain 186 1090 229.00 20 53.54 Changed CHAD domain
Chalcone PF02431 Domain 60 585 182.60 24 69.08 Changed Chalcone-flavanone isomerase
Chal_sti_synt_C PF02797 Domain 21 3003 132.70 50 39.80 Changed Chalcone and stilbene synthases, C-terminal domain
Chal_sti_synt_N PF00195 Domain 21 3069 174.40 49 54.42 Changed Chalcone and stilbene synthases, N-terminal domain
Channel_Tsx PF03502 Family 44 1502 237.30 33 88.51 Changed Nucleoside-specific channel-forming protein, Tsx
CHAP PF05257 Domain 47 5579 122.10 25 30.57 Changed CHAP domain
chaperone_DMP PF10448 Family 18 73 144.80 21 96.35 Changed 20S proteasome chaperone
Chaperone_III PF07824 Domain 4 132 106.40 88 98.71 Changed Type III secretion chaperone domain
ChAPs PF09295 Family 14 327 276.20 23 43.34 Changed ChAPs (Chs5p-Arf1p-binding proteins)
CHASE PF03924 Domain 191 1214 181.20 18 21.82 Changed CHASE domain
CHASE2 PF05226 Domain 160 950 318.30 20 45.69 Changed CHASE2 domain
CHASE3 PF05227 Domain 180 1210 135.90 19 20.96 Changed CHASE3 domain
CHASE4 PF05228 Domain 95 529 160.10 17 23.09 Changed CHASE4 domain
CHAT PF12770 Domain 82 1893 278.30 18 28.37 Changed CHAT domain
CHB_HEX PF03173 Domain 6 353 155.80 34 18.70 Changed Putative carbohydrate binding domain
CHB_HEX_C PF03174 Domain 264 1239 74.60 23 9.83 Changed Chitobiase/beta-hexosaminidase C-terminal domain
CHB_HEX_C_1 PF13290 Family 268 225 68.50 26 8.39 Changed Chitobiase/beta-hexosaminidase C-terminal domain
CHCH PF06747 Domain 53 994 35.40 25 22.76 Changed CHCH domain
CHD5 PF04420 Family 27 271 152.20 27 75.98 Changed CHD5-like protein
CHDCT2 PF08074 Domain 4 307 160.40 78 10.29 Changed CHDCT2 (NUC038) domain
CHDNT PF08073 Domain 5 268 54.50 69 3.24 Changed CHDNT (NUC034) domain
CheB_methylest PF01339 Domain 180 3655 180.30 37 42.15 Changed CheB methylesterase
CheC PF04509 Domain 33 1993 37.70 36 24.19 Changed CheC-like family
CheD PF03975 Family 150 1074 114.90 30 61.85 Changed CheD chemotactic sensory transduction
CheF-arch PF04283 Family 14 80 221.30 22 74.64 Changed Chemotaxis signal transduction system protein F from archaea
CheR PF01739 Domain 22 3912 191.20 32 48.37 Changed CheR methyltransferase, SAM binding domain
CheR_N PF03705 Domain 77 3379 56.40 24 14.23 Changed CheR methyltransferase, all-alpha domain
CheW PF01584 Domain 247 10977 135.50 21 33.57 Changed CheW-like domain
CheX PF13690 Domain 95 880 97.90 23 51.70 Changed Chemotaxis phosphatase CheX
CheY-binding PF09078 Domain 30 622 64.90 65 9.76 Changed CheY binding
CheZ PF04344 Family 60 1206 184.90 44 83.43 Changed Chemotaxis phosphatase, CheZ
CHGN PF05679 Family 13 643 400.30 22 63.56 Changed Chondroitin N-acetylgalactosaminyltransferase
Chibby PF14645 Family 14 172 115.10 33 58.82 New Chibby family
ChiC PF06483 Family 20 239 178.60 51 18.04 Changed Chitinase C
CHIPS PF11434 Family 3 98 89.50 99 60.91 Changed Chemotaxis-inhibiting protein CHIPS
Chisel PF15355 Family 9 43 84.40 77 98.29 New Stretch-responsive small skeletal muscle X protein, Chisel
ChitinaseA_N PF08329 Domain 43 378 122.60 40 18.18 Changed Chitinase A, N-terminal domain
Chitin_bind_1 PF00187 Domain 18 1066 38.80 51 11.02 Changed Chitin recognition protein
Chitin_bind_3 PF03067 Domain 128 1556 176.70 28 53.03 Changed Chitin binding domain
Chitin_bind_4 PF00379 Family 157 3539 53.00 32 25.39 Changed Insect cuticle protein
Chitin_synth_1 PF01644 Family 14 884 143.70 53 23.85 Changed Chitin synthase
Chitin_synth_1N PF08407 Family 55 491 79.90 43 8.49 Changed Chitin synthase N-terminal
Chitin_synth_2 PF03142 Family 10 1072 331.20 28 34.17 Changed Chitin synthase
ChlamPMP_M PF07548 Family 55 594 177.10 26 16.15 Changed Chlamydia polymorphic membrane protein middle domain
Chlamy_scaf PF09675 Family 4 9 108.80 40 74.45 Changed Chlamydia-phage Chp2 scaffold (Chlamy_scaf)
Chlam_OMP PF01308 Family 4 1235 269.70 66 99.06 Changed Chlamydia major outer membrane protein
Chlam_OMP3 PF03503 Family 3 38 53.30 81 60.81 Changed Chlamydia cysteine-rich outer membrane protein 3
Chlam_OMP6 PF03504 Family 2 69 91.30 82 20.13 Changed Chlamydia cysteine-rich outer membrane protein 6
Chlam_PMP PF02415 Repeat 528 2166 25.80 43 6.13 Changed Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat
Chlam_vir PF05475 Family 3 39 207.60 73 99.67 Changed Chlamydia virulence protein PGP3-D
ChlI PF13541 Domain 173 7224 111.30 31 23.71 Changed Subunit ChlI of Mg-chelatase
Chloroa_b-bind PF00504 Family 157 2672 131.40 25 66.18 Changed Chlorophyll A-B binding protein
Chlorophyllase PF07224 Family 4 48 233.40 35 75.56 Changed Chlorophyllase
Chlorophyllase2 PF12740 Family 21 87 210.10 26 60.91 Changed Chlorophyllase enzyme
Chloroplast_duf PF14476 Family 14 101 250.10 52 75.27 New Petal formation-expressed
Chlorosome_CsmC PF11098 Family 5 13 138.80 73 99.18 Changed Chlorosome envelope protein C
Chlorovi_GP_rpt PF06598 Repeat 36 321 34.10 45 25.53 Changed Chlorovirus glycoprotein repeat
Chlor_dismutase PF06778 Family 15 1117 187.80 35 69.25 Changed Chlorite dismutase
CHMI PF02962 Domain 3 831 119.90 39 95.22 Changed 5-carboxymethyl-2-hydroxymuconate isomerase
CholecysA-Rec_N PF09193 Domain 5 39 47.20 73 11.41 Changed Cholecystokinin A receptor, N-terminal
Choline_kinase PF01633 Family 38 1798 199.50 21 51.55 Changed Choline/ethanolamine kinase
Choline_kin_N PF04428 Family 21 146 62.40 31 9.87 Changed Choline kinase N terminus
Choline_sulf_C PF12411 Family 37 292 54.00 51 10.51 Changed Choline sulfatase enzyme C terminal
Choline_transpo PF04515 Family 73 1097 295.60 23 51.13 Changed Plasma-membrane choline transporter
Chol_subst-bind PF09129 Domain 3 72 295.20 57 53.89 Changed Cholesterol oxidase, substrate-binding
Chondroitinas_B PF14592 Family 6 114 320.70 28 50.89 New Chondroitinase B
Chon_Sulph_att PF06566 Domain 3 37 225.00 74 43.01 Changed Chondroitin sulphate attachment domain
CHORD PF04968 Family 47 678 62.90 45 38.49 Changed CHORD
Chordopox_A13L PF05961 Family 8 55 68.40 66 99.31 Changed Chordopoxvirus A13L protein
Chordopox_A15 PF05846 Family 8 45 90.50 59 96.22 Changed Chordopoxvirus A15 protein
Chordopox_A20R PF05941 Family 12 69 326.60 57 77.69 Changed Chordopoxvirus A20R protein
Chordopox_A30L PF06015 Family 10 57 72.70 57 98.13 Changed Chordopoxvirus A30L protein
Chordopox_A33R PF05966 Family 6 66 170.40 47 96.24 Changed Chordopoxvirus A33R protein
Chordopox_A35R PF05989 Family 9 54 157.80 49 96.24 Changed Chordopoxvirus A35R protein
Chordopox_E11 PF06138 Family 8 48 127.00 59 97.10 Changed Chordopoxvirus E11 protein
Chordopox_G2 PF05796 Family 12 66 213.00 60 96.15 Changed Chordopoxvirus protein G2
Chordopox_G3 PF06129 Family 12 50 107.80 52 98.97 Changed Chordopoxvirus G3 protein
Chordopox_L2 PF05803 Family 8 54 87.00 50 96.83 Changed Chordopoxvirus L2 protein
Chordopox_RPO7 PF05864 Family 7 45 63.00 78 99.96 Changed Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)
Chorein_N PF12624 Family 121 1194 109.70 25 4.37 Changed N-terminal region of Chorein, a TM vesicle-mediated sorter
Chorion_1 PF01723 Family 14 91 136.40 30 89.51 Changed Chorion protein
Chorion_2 PF03964 Family 14 51 106.00 35 72.01 Changed Chorion family 2
Chorion_3 PF05387 Family 4 75 201.60 45 88.03 Changed Chorion family 3
Chorion_S16 PF05836 Family 5 37 107.10 79 78.20 Changed Chorion protein S16
Chorismate_bind PF00425 Family 163 11419 249.70 32 53.38 Changed chorismate binding enzyme
Chorismate_synt PF01264 Family 158 4715 336.60 44 93.20 Changed Chorismate synthase
Chor_lyase PF04345 Family 3 1188 159.80 37 92.75 Changed Chorismate lyase
ChpXY PF10216 Family 18 117 363.50 58 91.73 Changed CO2 hydration protein (ChpXY)
CHRD PF07452 Domain 101 936 117.80 24 54.16 Changed CHRD domain
Chromadorea_ALT PF05535 Family 6 43 75.70 56 34.20 Changed Chromadorea ALT protein
Chromate_transp PF02417 Family 103 4595 171.40 25 85.64 Changed Chromate transporter
Chrome_Resist PF09828 Family 46 307 131.70 46 51.68 Changed Chromate resistance exported protein
Chromo PF00385 Domain 173 5794 53.30 24 6.52 Changed Chromo (CHRromatin Organisation MOdifier) domain
Chromosome_seg PF13889 Family 23 266 62.40 45 8.09 Changed Chromosome segregation during meiosis
Chromo_shadow PF01393 Domain 8 489 56.80 49 28.14 Changed Chromo shadow domain
Chs3p PF12271 Family 15 224 274.80 39 90.17 Changed Chitin synthase III catalytic subunit
Churchill PF06573 Family 7 78 99.20 68 61.12 Changed Churchill protein
ChuX_HutX PF06228 Domain 38 458 137.40 45 67.28 Changed Haem utilisation ChuX/HutX
CHU_C PF13585 Domain 160 1085 88.80 27 6.67 Changed C-terminal domain of CHU protein family
ChW PF07538 Repeat 194 1324 35.70 41 26.52 Changed Clostridial hydrophobic W
CHZ PF09649 Domain 25 201 37.30 40 13.89 Changed Histone chaperone domain CHZ
CI-B14_5a PF07347 Family 9 115 95.00 41 80.28 Changed NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)
CIA30 PF08547 Family 83 768 156.70 22 55.05 Changed Complex I intermediate-associated protein 30 (CIA30)
CIAPIN1 PF05093 Family 25 368 85.80 45 31.98 Changed Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
Cid2 PF09774 Family 22 228 140.50 30 83.25 Changed Caffeine-induced death protein 2
CIDE-N PF02017 Domain 7 382 76.00 38 26.28 Changed CIDE-N domain
cIII PF08134 Family 3 42 43.80 89 98.29 Changed cIII protein family
CIMR PF00878 Family 12 1464 136.00 23 77.56 Changed Cation-independent mannose-6-phosphate receptor repeat
CinA PF02464 Family 102 4443 153.50 36 58.87 Changed Competence-damaged protein
Circo_capsid PF02443 Family 12 1556 196.30 62 95.87 Changed Circovirus capsid protein
Cir_Bir_Yir PF06022 Family 119 1443 235.70 29 83.60 Changed Plasmodium variant antigen protein Cir/Yir/Bir
Cir_N PF10197 Domain 39 495 37.10 38 10.07 Changed N-terminal domain of CBF1 interacting co-repressor CIR
CITED PF04487 Family 11 168 163.30 35 97.93 Changed CITED
CitF PF04223 Family 5 1131 448.90 64 91.35 Changed Citrate lyase, alpha subunit (CitF)
CitG PF01874 Family 135 1741 248.10 35 85.49 Changed ATP:dephospho-CoA triphosphoribosyl transferase
CitMHS PF03600 Family 32 7280 359.10 15 84.92 Changed Citrate transporter
Citrate_ly_lig PF08218 Domain 14 1051 182.00 56 52.98 Changed Citrate lyase ligase C-terminal domain
Citrate_synt PF00285 Domain 121 9392 289.30 36 82.11 Changed Citrate synthase
Citrus_P18 PF05520 Family 3 112 151.10 95 100.00 Changed Citrus tristeza virus P18 protein
CitT PF12431 Family 48 854 29.40 49 13.06 Changed Transcriptional regulator
CitX PF03802 Family 29 1055 165.80 43 81.99 Changed Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
CK1gamma_C PF12605 Family 17 249 69.50 50 17.15 Changed Casein kinase 1 gamma C terminal
CK2S PF15011 Family 18 90 155.10 31 72.95 New Casein Kinase 2 substrate
CKAP2_C PF15297 Family 19 145 252.30 36 51.18 New Cytoskeleton-associated protein 2 C-terminus
CKS PF01111 Domain 33 488 71.50 58 58.47 Changed Cyclin-dependent kinase regulatory subunit
CK_II_beta PF01214 Domain 66 783 179.10 47 69.13 Changed Casein kinase II regulatory subunit
CLAG PF03805 Family 10 213 436.10 45 84.97 Changed Cytoadherence-linked asexual protein
CLAMP PF14769 Family 50 207 94.30 27 33.37 New Flagellar C1a complex subunit C1a-32
CLASP_N PF12348 Family 57 1343 203.10 18 24.51 Changed CLASP N terminal
Class_IIIsignal PF04021 Motif 49 226 27.60 32 22.13 Changed Class III signal peptide
Clathrin PF00637 Family 150 4251 136.90 16 33.12 Changed Region in Clathrin and VPS
Clathrin-link PF09268 Domain 17 470 24.00 68 2.26 Changed Clathrin, heavy-chain linker
Clathrin_bdg PF15045 Family 36 120 73.40 46 10.68 New Clathrin-binding box of Aftiphilin, vesicle trafficking
Clathrin_H_link PF13838 Domain 51 782 59.40 63 6.54 Changed Clathrin-H-link
Clathrin_lg_ch PF01086 Family 28 493 200.20 27 86.99 Changed Clathrin light chain
Clathrin_propel PF01394 Repeat 71 581 38.40 30 4.84 Changed Clathrin propeller repeat
Clat_adaptor_s PF01217 Domain 7 3187 135.90 25 49.99 Changed Clathrin adaptor complex small chain
Claudin_2 PF13903 Family 37 835 182.30 16 73.69 Changed PMP-22/EMP/MP20/Claudin tight junction
Claudin_3 PF06653 Family 24 100 156.80 19 88.16 Changed Tight junction protein, Claudin-like
Clavanin PF05452 Family 2 6 70.50 82 100.00 Changed Clavanin
Clc-like PF07062 Family 5 78 179.30 26 62.97 Changed Clc-like
CLCA_N PF08434 Family 13 295 228.60 40 29.90 Changed Calcium-activated chloride channel
Cleaved_Adhesin PF07675 Domain 9 203 157.90 28 23.51 Changed Cleaved Adhesin Domain
Clenterotox PF03505 Family 4 72 172.20 44 58.07 Changed Clostridium enterotoxin
CLIP PF12032 Domain 120 622 53.10 30 15.22 Changed Regulatory CLIP domain of proteinases
CLN3 PF02487 Family 2 477 272.00 30 81.25 Changed CLN3 protein
CLN5 PF15014 Family 4 59 283.40 61 85.46 New Ceroid-lipofuscinosis neuronal protein 5
CLN6 PF15156 Family 4 65 249.00 76 86.16 New Ceroid-lipofuscinosis neuronal protein 6
Cloacin PF03515 Family 8 84 272.40 34 49.83 Changed Colicin-like bacteriocin tRNase domain
Cloacin_immun PF03513 Family 6 22 80.50 54 72.32 Changed Cloacin immunity protein
Closter_coat PF01785 Family 11 1326 171.40 35 75.75 Changed Closterovirus coat protein
Clostridium_P47 PF06597 Family 12 113 408.90 26 80.93 Changed Clostridium P-47 protein
Clp1 PF06807 Family 16 510 194.00 21 39.16 Changed Pre-mRNA cleavage complex II protein Clp1
ClpB_D2-small PF10431 Domain 772 19559 81.80 27 12.29 Changed C-terminal, D2-small domain, of ClpB protein
ClpS PF02617 Family 194 2895 79.80 36 28.96 Changed ATP-dependent Clp protease adaptor protein ClpS
CLPTM1 PF05602 Family 26 492 368.50 30 71.07 Changed Cleft lip and palate transmembrane protein 1 (CLPTM1)
Clp_N PF02861 Family 167 16656 51.20 24 11.11 Changed Clp amino terminal domain
CLP_protease PF00574 Domain 86 9058 176.10 39 75.01 Changed Clp protease
Clr2 PF10383 Family 13 79 132.90 27 19.30 Changed Transcription-silencing protein Clr2
Clr5 PF14420 Domain 93 327 54.30 29 10.23 Changed Clr5 domain
CLTH PF10607 Domain 132 1458 169.80 20 40.24 Changed CTLH/CRA C-terminal to LisH motif domain
CLU PF13236 Domain 42 412 207.90 35 16.22 Changed Clustered mitochondria
Cluap1 PF10234 Family 15 186 229.40 42 63.34 Changed Clusterin-associated protein-1
Clusterin PF01093 Family 14 180 339.10 37 92.73 Changed Clusterin
CLU_N PF15044 Family 51 327 76.20 35 5.87 New Mitochondrial function, CLU-N-term
CM1 PF03026 Family 2 132 218.90 100 86.56 Changed Influenza C virus M1 protein
CM2 PF03021 Family 2 111 139.00 98 70.10 Changed Influenza C virus M2 protein
CMAS PF02353 Family 12 4148 263.10 35 68.06 Changed Mycolic acid cyclopropane synthetase
Cmc1 PF08583 Family 52 511 68.80 21 58.80 Changed Cytochrome c oxidase biogenesis protein Cmc1 like
CmcH_NodU PF02543 Family 11 743 344.30 32 61.74 Changed Carbamoyltransferase
CmcI PF04989 Family 31 285 186.70 38 79.54 Changed Cephalosporin hydroxylase
CMD PF02627 Family 215 9489 82.90 18 51.31 Changed Carboxymuconolactone decarboxylase family
CMS1 PF14617 Family 5 248 221.00 27 77.70 New U3-containing 90S pre-ribosomal complex subunit
CMV_1a PF12467 Family 14 89 156.90 59 16.17 Changed Cucumber mosaic virus 1a protein family
CMV_1a_C PF12503 Family 11 89 88.00 68 9.08 Changed Cucumber mosaic virus 1a protein C terminal
CMV_US PF08001 Family 8 91 218.80 30 93.92 Changed CMV US
Cmyb_C PF09316 Family 15 288 154.40 46 24.59 Changed C-myb, C-terminal
CM_1 PF07736 Domain 57 434 116.20 43 92.42 Changed Chorismate mutase type I
CM_2 PF01817 Domain 101 5974 78.70 27 28.68 Changed Chorismate mutase type II
Cm_res_leader PF08077 Family 2 3 17.00 100 100.00 Changed Chloramphenicol resistance gene leader peptide
Cna_B PF05738 Family 135 13573 73.40 23 22.10 Changed Cna protein B-type domain
Cnd1 PF12717 Family 77 571 172.30 27 14.18 Changed non-SMC mitotic condensation complex subunit 1
Cnd1_N PF12922 Domain 44 291 161.40 25 13.28 Changed non-SMC mitotic condensation complex subunit 1, N-term
Cnd2 PF05786 Family 15 462 510.80 21 88.67 Changed Condensin complex subunit 2
Cnd3 PF12719 Family 57 330 307.10 23 30.42 Changed Nuclear condensing complex subunits, C-term domain
CNF1 PF05785 Domain 10 55 278.90 37 34.56 Changed Rho-activating domain of cytotoxic necrotizing factor
CNH PF00780 Family 62 1933 265.10 21 23.92 Changed CNH domain
Cnl2_NKP2 PF09447 Family 11 88 66.90 42 34.58 Changed Cnl2/NKP2 family protein
cNMP_binding PF00027 Domain 342 26013 90.20 18 23.38 Changed Cyclic nucleotide-binding domain
CNP1 PF08750 Family 22 187 146.50 39 75.01 Changed CNP1-like family
CNPase PF05881 Family 5 71 204.90 55 53.52 Changed 2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)
CNRIP1 PF15043 Family 11 73 150.20 52 97.72 New CB1 cannabinoid receptor-interacting protein 1
CNTF PF01110 Domain 2 48 175.60 49 95.14 Changed Ciliary neurotrophic factor
CN_hydrolase PF00795 Family 58 15146 178.50 18 46.69 Changed Carbon-nitrogen hydrolase
Coa1 PF08695 Family 43 323 113.00 22 61.06 Changed Cytochrome oxidase complex assembly protein 1
CoaE PF01121 Family 13 4826 176.30 33 80.94 Changed Dephospho-CoA kinase
Coagulase PF08764 Domain 11 424 256.90 41 46.40 Changed Staphylococcus aureus coagulase
Coagulin PF02035 Domain 2 4 173.00 78 93.51 Changed Coagulin
Coatamer_beta_C PF07718 Domain 25 351 138.40 49 15.21 Changed Coatomer beta C-terminal region
CoatB PF10389 Family 6 39 46.50 34 62.44 Changed Bacteriophage coat protein B
Coatomer_b_Cpla PF14806 Domain 30 371 123.70 54 14.51 New Coatomer beta subunit appendage platform
Coatomer_E PF04733 Family 7 430 243.90 29 86.34 Changed Coatomer epsilon subunit
Coatomer_WDAD PF04053 Family 60 828 397.60 33 41.01 Changed Coatomer WD associated region
Coat_F PF07875 Domain 65 780 63.60 24 50.09 Changed Coat F domain
Coat_X PF07552 Domain 22 264 60.10 42 71.12 Changed Spore Coat Protein X and V domain
CoA_binding PF02629 Domain 70 6798 96.70 32 28.56 Changed CoA binding domain
CoA_binding_2 PF13380 Domain 341 4531 121.00 29 26.68 Changed CoA binding domain
CoA_binding_3 PF13727 Domain 56 4439 172.50 16 32.80 Changed CoA-binding domain
CoA_trans PF01144 Domain 43 6881 208.60 24 73.96 Changed Coenzyme A transferase
CoA_transf_3 PF02515 Family 118 8297 185.50 29 47.03 Changed CoA-transferase family III
Cobalamin_bind PF01122 Family 11 162 281.40 30 67.51 Changed Eukaryotic cobalamin-binding protein
CobA_CobO_BtuR PF02572 Family 173 2528 170.90 42 88.83 Changed ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
CobD_Cbib PF03186 Family 139 2167 282.10 30 91.11 Changed CobD/Cbib protein
Cobl PF09469 Domain 4 145 79.10 57 8.93 Changed Cordon-bleu ubiquitin-like domain
CobN-Mg_chel PF02514 Family 129 1875 877.50 30 85.15 Changed CobN/Magnesium Chelatase
COBRA PF04833 Family 22 265 163.40 49 35.02 Changed COBRA-like protein
COBRA1 PF06209 Family 6 144 349.50 39 69.02 Changed Cofactor of BRCA1 (COBRA1)
CobS PF02654 Family 8 2349 235.20 29 94.17 Changed Cobalamin-5-phosphate synthase
CobS_N PF12556 Family 79 346 35.70 48 11.07 Changed Cobaltochelatase CobS subunit N terminal
CobT PF06213 Family 6 469 275.30 25 44.87 Changed Cobalamin biosynthesis protein CobT
CobT_C PF11775 Domain 2 462 195.60 50 32.61 Changed Cobalamin biosynthesis protein CobT VWA domain
CobU PF02283 Domain 192 2330 165.20 37 82.22 Changed Cobinamide kinase / cobinamide phosphate guanyltransferase
cobW PF02492 Domain 62 9942 177.40 27 56.79 Changed CobW/HypB/UreG, nucleotide-binding domain
CobW_C PF07683 Domain 158 5707 96.90 22 27.04 Changed Cobalamin synthesis protein cobW C-terminal domain
Cob_adeno_trans PF01923 Domain 180 2946 162.40 34 75.35 Changed Cobalamin adenosyltransferase
Codanin-1_C PF15296 Family 23 96 117.00 46 10.95 New Codanin-1 C-terminus
CodY PF06018 Domain 17 1124 176.60 45 67.49 Changed CodY GAF-like domain
COesterase PF00135 Domain 123 8736 405.50 22 85.47 Changed Carboxylesterase family
CofC PF01983 Family 3 277 192.50 28 86.28 Changed Guanylyl transferase CofC like
Cofilin_ADF PF00241 Domain 16 2431 121.70 20 53.52 Changed Cofilin/tropomyosin-type actin-binding protein
COG2 PF06148 Family 19 316 134.30 27 23.60 Changed COG (conserved oligomeric Golgi) complex component, COG2
COG4 PF08318 Domain 14 351 282.30 26 39.00 Changed COG4 transport protein
COG5 PF10392 Family 16 280 126.10 26 20.85 Changed Golgi transport complex subunit 5
COG6 PF06419 Domain 29 369 501.50 27 82.22 Changed Conserved oligomeric complex COG6
COG7 PF10191 Family 8 242 481.30 21 88.41 Changed Golgi complex component 7 (COG7)
Cohesin PF00963 Domain 40 1118 151.00 25 40.86 Changed Cohesin domain
Cohesin_HEAT PF12765 Family 52 424 37.80 32 2.43 Changed HEAT repeat associated with sister chromatid cohesion
Cohesin_load PF10345 Family 21 268 467.70 23 69.21 Changed Cohesin loading factor
CoiA PF06054 Family 14 1177 285.00 25 86.93 Changed Competence protein CoiA-like family
Coiled PF05710 Family 10 120 84.10 32 90.54 Changed Coiled coil
Coiled-coil_56 PF09813 Family 4 119 85.20 31 62.89 Changed Coiled-coil domain-containing protein 56
Coleoptericin PF06286 Family 3 16 111.00 48 95.23 Changed Coleoptericin
COLFI PF01410 Family 36 1510 167.00 40 15.57 Changed Fibrillar collagen C-terminal domain
Colicin PF01024 Domain 14 176 170.20 39 38.52 Changed Colicin pore forming domain
Colicin-DNase PF12639 Domain 57 525 108.50 29 25.68 Changed DNase/tRNase domain of colicin-like bacteriocin
Colicin_C PF12106 Domain 12 86 34.60 49 16.18 Changed Colicin C terminal ribonuclease domain
Colicin_D PF11429 Family 8 39 87.90 39 12.70 Changed Colicin D
Colicin_Ia PF11504 Family 3 56 70.40 98 12.45 Changed Colicin Ia
Colicin_im PF03857 Family 4 38 130.20 56 79.78 Changed Colicin immunity protein
Colicin_immun PF09204 Domain 10 59 78.90 43 88.30 Changed Bacterial self-protective colicin-like immunity
Colicin_M PF14859 Family 2 47 223.20 56 87.11 New Colicin M
Colicin_Pyocin PF01320 Domain 29 341 84.90 43 95.53 Changed Colicin immunity protein / pyocin immunity protein
Colicin_V PF02674 Family 164 3878 149.10 22 74.52 Changed Colicin V production protein
Colipase PF01114 Domain 9 50 39.20 63 37.13 Changed Colipase, N-terminal domain
Colipase-like PF15083 Family 9 62 71.90 41 90.69 New Colipase-like
Colipase_C PF02740 Domain 5 53 44.20 69 42.92 Changed Colipase, C-terminal domain
Collagen PF01391 Repeat 41 44425 63.30 39 36.42 Changed Collagen triple helix repeat (20 copies)
Collagen_bind PF05737 Domain 15 1660 134.50 19 22.34 Changed Collagen binding domain
Collagen_bind_2 PF12904 Domain 12 120 92.40 34 19.50 Changed Putative collagen-binding domain of a collagenase
Collar PF07484 Domain 181 1934 51.40 41 13.56 Changed Phage Tail Collar Domain
Col_cuticle_N PF01484 Family 113 1198 51.90 23 16.32 Changed Nematode cuticle collagen N-terminal domain
ComA PF02679 Family 30 234 238.90 32 79.40 Changed (2R)-phospho-3-sulfolactate synthase (ComA)
ComC PF03047 Family 20 666 29.20 45 61.52 Changed COMC family
ComFB PF10719 Family 60 450 83.20 28 65.09 Changed Late competence development protein ComFB
ComGG PF14173 Family 18 125 94.30 38 78.36 Changed ComG operon protein 7
ComJ PF11033 Family 7 123 128.10 58 96.00 Changed Competence protein J (ComJ)
ComK PF06338 Family 19 719 150.30 29 87.47 Changed ComK protein
Como_LCP PF02247 Domain 10 129 314.50 38 47.63 Changed Large coat protein
Como_SCP PF02248 Domain 10 94 162.30 36 20.83 Changed Small coat protein
COMP PF11598 Family 12 203 44.50 45 5.26 Changed Cartilage oligomeric matrix protein
COMPASS-Shg1 PF05205 Family 22 260 106.20 31 17.20 Changed COMPASS (Complex proteins associated with Set1p) component shg1
Competence PF03772 Family 123 4251 262.70 21 39.09 Changed Competence protein
CompInhib_SCIN PF11546 Family 4 473 111.40 56 97.12 Changed Staphylococcal complement inhibitor SCIN
Complex1_30kDa PF00329 Family 131 5889 105.60 34 33.03 Changed Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Complex1_49kDa PF00346 Family 7 7353 185.50 28 55.80 Changed Respiratory-chain NADH dehydrogenase, 49 Kd subunit
Complex1_51K PF01512 Family 123 5590 161.60 39 31.64 Changed Respiratory-chain NADH dehydrogenase 51 Kd subunit
Complex1_LYR PF05347 Family 246 1703 60.50 22 42.65 Changed Complex 1 protein (LYR family)
Complex1_LYR_1 PF13232 Domain 236 283 65.40 24 34.50 Changed Complex1_LYR-like
Complex1_LYR_2 PF13233 Family 66 376 103.20 18 73.89 Changed Complex1_LYR-like
ComX PF05952 Family 11 61 54.90 33 97.18 Changed Bacillus competence pheromone ComX
ComZ PF10815 Family 7 116 55.40 79 83.53 Changed ComZ
Con-6 PF10346 Family 23 178 35.80 43 41.08 Changed Conidiation protein 6
Condensation PF00668 Family 42 20609 273.20 20 26.78 Changed Condensation domain
Condensin2nSMC PF12422 Family 26 201 148.20 29 21.30 Changed Condensin II non structural maintenance of chromosomes subunit
Connexin PF00029 Family 65 1256 102.60 49 33.51 Changed Connexin
Connexin43 PF03508 Family 3 90 20.00 92 5.88 Changed Gap junction alpha-1 protein (Cx43)
Connexin50 PF03509 Family 4 47 66.60 70 15.69 Changed Gap junction alpha-8 protein (Cx50)
Connexin_CCC PF10582 Domain 76 1238 66.10 49 21.43 Changed Gap junction channel protein cysteine-rich domain
Conotoxin PF02950 Domain 112 926 70.10 26 96.65 Changed Conotoxin
Consortin_C PF15281 Family 12 60 109.40 64 19.29 New Consortin C-terminus
Cons_hypoth698 PF03601 Family 13 3130 301.90 31 87.76 Changed Conserved hypothetical protein 698
Cons_hypoth95 PF03602 Family 27 4548 175.00 31 90.57 Changed Conserved hypothetical protein 95
COOH-NH2_lig PF14395 Family 8 44 234.20 36 50.04 Changed Phage phiEco32-like COOH.NH2 ligase-type 2
COP-gamma_platf PF08752 Domain 81 438 145.80 42 17.35 Changed Coatomer gamma subunit appendage platform subdomain
COP23 PF14218 Family 63 131 146.20 22 65.35 Changed Circadian oscillating protein COP23
CopB PF05275 Family 81 554 205.50 41 65.28 Changed Copper resistance protein B precursor (CopB)
CopC PF04234 Domain 162 1651 96.80 35 42.58 Changed CopC domain
CopD PF05425 Family 210 1897 102.10 27 27.84 Changed Copper resistance protein D
COPIIcoated_ERV PF07970 Family 51 979 187.70 29 53.30 Changed Endoplasmic reticulum vesicle transporter
Copine PF07002 Family 18 1157 139.10 46 27.26 Changed Copine
COPI_assoc PF08507 Family 24 296 136.70 20 72.33 Changed COPI associated protein
COPI_C PF06957 Family 5 402 362.60 35 33.49 Changed Coatomer (COPI) alpha subunit C-terminus
CopK PF11525 Family 5 22 71.80 56 78.22 Changed Copper resistance protein K
Copper-bind PF00127 Domain 31 1467 103.80 25 50.66 Changed Copper binding proteins, plastocyanin/azurin family
Copper-fist PF00649 Domain 23 240 39.50 57 8.31 Changed Copper fist DNA binding domain
COPR5 PF15340 Family 8 37 146.60 76 88.73 New Cooperator of PRMT5 family
Coprogen_oxidas PF01218 Family 93 2155 276.40 51 93.10 Changed Coproporphyrinogen III oxidase
Coq4 PF05019 Family 27 475 198.00 31 79.73 Changed Coenzyme Q (ubiquinone) biosynthesis protein Coq4
COQ7 PF03232 Family 47 840 164.50 33 78.42 Changed Ubiquinone biosynthesis protein COQ7
COQ9 PF08511 Domain 70 470 77.20 34 29.11 Changed COQ9
Cor1 PF04803 Family 12 157 115.40 34 52.16 Changed Cor1/Xlr/Xmr conserved region
CorA PF01544 Family 79 8370 264.00 18 74.31 Changed CorA-like Mg2+ transporter protein
CorC_HlyC PF03471 Domain 174 11377 80.60 23 18.84 Changed Transporter associated domain
Cornichon PF03311 Family 31 647 110.50 35 84.83 Changed Cornichon protein
Cornifin PF02389 Family 5 373 118.10 16 44.10 Changed Cornifin (SPRR) family
Coronavirus_5 PF05528 Family 2 99 80.40 87 99.62 Changed Coronavirus gene 5 protein
Corona_3 PF04694 Family 4 89 59.00 82 84.35 Changed Coronavirus ORF3 protein
Corona_5a PF06336 Family 3 85 63.90 84 99.93 Changed Coronavirus 5a protein
Corona_6B_7B PF03262 Family 5 357 194.70 87 100.00 Changed Coronavirus 6B/7B protein
Corona_7 PF02398 Family 2 105 77.30 75 100.47 Changed Coronavirus protein 7
Corona_I PF03187 Family 3 82 183.00 55 98.69 Changed Corona nucleocapsid I protein
Corona_M PF01635 Family 14 976 199.50 48 97.13 Changed Coronavirus M matrix/glycoprotein
Corona_NS1 PF06145 Family 2 37 28.80 90 77.53 Changed Coronavirus nonstructural protein NS1
Corona_NS2 PF04753 Family 3 81 108.40 73 99.55 Changed Coronavirus non-structural protein NS2
Corona_NS2A PF05213 Family 4 104 202.80 52 38.20 Changed Coronavirus NS2A protein
Corona_NS3b PF03053 Family 4 228 211.70 53 99.20 Changed ORF3b coronavirus protein
Corona_NS4 PF03905 Family 3 53 47.40 70 65.50 Changed Coronavirus non-structural protein NS4
Corona_NS8 PF12093 Family 2 88 68.90 56 96.56 Changed Coronavirus NS8 protein
Corona_nucleoca PF00937 Family 21 1034 294.10 37 87.79 Changed Coronavirus nucleocapsid protein
Corona_RPol_N PF06478 Family 11 440 326.60 64 6.25 Changed Coronavirus RPol N-terminus
Corona_S1 PF01600 Family 8 2634 374.30 50 73.17 Changed Coronavirus S1 glycoprotein
Corona_S2 PF01601 Family 22 1416 413.10 39 54.14 Changed Coronavirus S2 glycoprotein
CortBP2 PF09727 Family 8 414 128.90 39 16.96 Changed Cortactin-binding protein-2
Cortex-I_coil PF09304 Domain 4 18 102.60 35 23.56 Changed Cortexillin I, coiled coil
Cortexin PF11057 Family 5 92 80.10 57 97.67 Changed Cortexin of kidney
Costars PF14705 Domain 49 232 77.80 45 36.18 New Costars
CotE PF10628 Family 9 180 178.80 59 98.44 Changed Outer spore coat protein E (CotE)
CotH PF08757 Family 53 707 299.10 19 51.59 Changed CotH protein
CotJA PF11007 Family 50 348 37.80 39 49.19 Changed Spore coat associated protein JA (CotJA)
CotJB PF12652 Domain 71 380 77.60 41 85.47 Changed CotJB protein
Couple_hipA PF13657 Domain 185 1769 102.00 24 26.72 Changed HipA N-terminal domain
COX1 PF00115 Family 94 254351 227.90 58 95.26 Changed Cytochrome C and Quinol oxidase polypeptide I
COX14 PF14880 Family 45 167 57.10 23 37.66 New Cytochrome oxidase c assembly
COX15-CtaA PF02628 Family 146 2337 287.80 24 85.08 Changed Cytochrome oxidase assembly protein
COX16 PF14138 Family 52 253 79.60 35 58.69 Changed Cytochrome c oxidase assembly protein COX16
COX17 PF05051 Family 43 302 48.60 48 61.89 Changed Cytochrome C oxidase copper chaperone (COX17)
COX2 PF00116 Domain 32 31269 106.00 48 47.64 Changed Cytochrome C oxidase subunit II, periplasmic domain
COX2-transmemb PF09125 Domain 2 13 37.60 62 22.94 Changed Cytochrome C oxidase subunit II, transmembrane
COX2_TM PF02790 Family 32 25391 78.90 47 36.87 Changed Cytochrome C oxidase subunit II, transmembrane domain
COX3 PF00510 Family 21 13171 206.40 41 93.84 Changed Cytochrome c oxidase subunit III
COX4 PF02936 Family 10 463 129.20 29 76.99 Changed Cytochrome c oxidase subunit IV
COX4_pro PF03626 Family 250 2280 81.10 30 74.43 Changed Prokaryotic Cytochrome C oxidase subunit IV
COX4_pro_2 PF07835 Domain 36 225 44.90 37 68.34 Changed Bacterial aa3 type cytochrome c oxidase subunit IV
COX5A PF02284 Domain 3 318 103.20 52 69.73 Changed Cytochrome c oxidase subunit Va
COX5B PF01215 Domain 4 403 118.00 33 69.68 Changed Cytochrome c oxidase subunit Vb
COX6A PF02046 Family 31 404 102.90 34 78.21 Changed Cytochrome c oxidase subunit VIa
COX6B PF02297 Domain 58 675 66.70 32 59.76 Changed Cytochrome oxidase c subunit VIb
COX6C PF02937 Family 8 161 69.70 43 80.44 Changed Cytochrome c oxidase subunit VIc
COX7a PF02238 Family 8 306 53.40 42 59.85 Changed Cytochrome c oxidase subunit VIIa
COX7B PF05392 Family 8 75 75.90 63 98.05 Changed Cytochrome C oxidase chain VIIB
COX7C PF02935 Family 14 253 68.00 35 72.16 Changed Cytochrome c oxidase subunit VIIc
COX8 PF02285 Family 11 112 42.40 43 59.90 Changed Cytochrome oxidase c subunit VIII
COXG PF06240 Family 15 764 139.90 26 60.58 Changed Carbon monoxide dehydrogenase subunit G (CoxG)
CoxIIa PF08113 Family 2 13 34.30 59 88.49 Changed Cytochrome c oxidase subunit IIa family
COX_ARM PF06481 Motif 98 1360 47.10 36 14.66 Changed COX Aromatic Rich Motif
Co_AT_N PF12557 Family 89 1083 22.10 48 11.01 Changed Cob(I)alamin adenosyltransferase N terminal
CO_deh_flav_C PF03450 Domain 168 4331 98.20 24 19.57 Changed CO dehydrogenase flavoprotein C-terminal domain
CO_dh PF02552 Family 6 97 163.80 27 75.46 Changed CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
CP12 PF02672 Family 39 291 62.40 34 39.64 Changed CP12 domain
CP2 PF04516 Family 29 661 208.40 37 38.82 Changed CP2 transcription factor
CpcD PF01383 Domain 86 448 55.10 34 24.05 Changed CpcD/allophycocyanin linker domain
CPDase PF07823 Domain 15 138 191.60 23 91.61 Changed Cyclic phosphodiesterase-like protein
CpeS PF09367 Domain 66 209 158.60 29 89.90 Changed CpeS-like protein
CpeT PF06206 Family 51 207 162.10 27 83.45 Changed CpeT/CpcT family (DUF1001)
CPG4 PF15481 Family 15 49 91.60 21 27.44 New Chondroitin proteoglycan 4
CPL PF08144 Domain 8 270 141.50 26 20.63 Changed CPL (NUC119) domain
Cpl-7 PF08230 Domain 14 202 40.60 50 18.33 Changed Cpl-7 lysozyme C-terminal domain
Cpn10 PF00166 Domain 48 6057 90.70 44 92.00 Changed Chaperonin 10 Kd subunit
Cpn60_TCP1 PF00118 Family 94 23232 316.10 36 86.46 Changed TCP-1/cpn60 chaperonin family
CppA_C PF14507 Family 13 384 99.50 49 40.97 New CppA C-terminal
CppA_N PF14506 Family 12 394 117.00 61 50.78 New CppA N-terminal
CPSase_L_chain PF00289 Domain 157 23989 108.40 33 18.02 Changed Carbamoyl-phosphate synthase L chain, N-terminal domain
CPSase_L_D2 PF02786 Domain 16 23031 197.30 32 31.79 Changed Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3 PF02787 Domain 95 8742 120.70 43 14.93 Changed Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_sm_chain PF00988 Domain 134 6372 123.10 45 25.61 Changed Carbamoyl-phosphate synthase small chain, CPSase domain
CPSF100_C PF13299 Family 58 300 149.10 29 18.79 Changed Cleavage and polyadenylation factor 2 C-terminal
CPSF73-100_C PF11718 Domain 35 365 216.70 26 31.03 Changed Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
CPSF_A PF03178 Family 80 1132 296.80 22 26.18 Changed CPSF A subunit region
CPT PF07931 Domain 7 191 167.20 29 83.68 Changed Chloramphenicol phosphotransferase-like protein
CPW_WPC PF09717 Domain 72 270 60.40 28 48.96 Changed Plasmodium falciparum domain of unknown function (CPW_WPC)
CpXC PF14353 Family 43 128 122.00 21 47.72 Changed CpXC protein
CP_ATPgrasp_1 PF04174 Family 28 1353 327.40 42 53.87 Changed A circularly permuted ATPgrasp
CP_ATPgrasp_2 PF14403 Family 6 58 428.80 25 95.00 Changed Circularly permuted ATP-grasp type 2
CR6_interact PF10147 Family 9 102 192.60 32 86.81 Changed Growth arrest and DNA-damage-inducible proteins-interacting protein 1
CRA PF06589 Family 3 21 134.10 69 98.50 Changed Circumsporozoite-related antigen (CRA)
CRAL_TRIO PF00650 Domain 110 4026 152.30 20 37.53 Changed CRAL/TRIO domain
CRAL_TRIO_2 PF13716 Domain 101 1520 140.20 22 13.59 Changed Divergent CRAL/TRIO domain
CRAL_TRIO_N PF03765 Domain 148 2100 56.30 25 13.53 Changed CRAL/TRIO, N-terminal domain
CRAM_rpt PF07016 Repeat 2 132 23.90 95 108.27 Changed Cysteine-rich acidic integral membrane protein precursor
CRA_rpt PF07046 Repeat 5 164 41.10 84 82.01 Changed Cytoplasmic repetitive antigen (CRA) like repeat
CRCB PF02537 Family 106 5746 112.50 30 83.00 Changed CrcB-like protein
CRC_subunit PF08624 Family 22 230 138.20 50 24.36 Changed Chromatin remodelling complex Rsc7/Swp82 subunit
CreA PF05981 Family 61 1188 130.60 57 80.30 Changed CreA protein
Creatinase_N PF01321 Domain 170 7541 132.50 18 31.80 Changed Creatinase/Prolidase N-terminal domain
Creatininase PF02633 Family 163 1362 234.00 26 90.37 Changed Creatinine amidohydrolase
Creb_binding PF09030 Domain 4 148 105.30 55 4.94 Changed Creb binding
CreD PF06123 Family 48 880 380.70 47 94.10 Changed Inner membrane protein CreD
Cren7 PF11520 Family 7 51 58.70 53 95.26 Changed Chromatin protein Cren7
CReP_N PF10472 Domain 2 32 362.50 65 55.21 Changed eIF2-alpha phosphatase phosphorylation constitutive repressor
CRF PF00473 Family 7 187 39.40 47 25.30 Changed Corticotropin-releasing factor family
CRF-BP PF05428 Family 7 97 264.40 44 90.03 Changed Corticotropin-releasing factor binding protein (CRF-BP)
CRF1 PF10380 Family 13 51 121.50 44 16.05 Changed Transcription factor CRF1
CRIC_ras_sig PF10534 Domain 9 212 92.00 52 12.49 Changed Connector enhancer of kinase suppressor of ras
Crinivirus_P26 PF07416 Family 2 5 227.00 99 100.00 Changed Crinivirus P26 protein
Cript PF10235 Family 17 204 90.10 43 72.48 Changed Microtubule-associated protein CRIPT
Crisp PF08562 Domain 26 238 54.30 49 22.83 Changed Crisp
CRISPR_assoc PF08798 Domain 50 667 206.90 36 97.62 Changed CRISPR associated protein
CRISPR_Cas2 PF09827 Family 233 1845 82.80 23 82.31 Changed CRISPR associated protein Cas2
CRISPR_Cse1 PF09481 Family 55 645 456.40 33 89.10 Changed CRISPR-associated protein Cse1 (CRISPR_cse1)
CRISPR_Cse2 PF09485 Family 58 642 146.00 32 78.32 Changed CRISPR-associated protein Cse2 (CRISPR_cse2)
Crl PF07417 Family 17 658 124.10 67 97.53 Changed Transcriptional regulator Crl
CRM1_C PF08767 Domain 29 475 280.10 33 28.82 Changed CRM1 C terminal
Cro PF09048 Domain 5 146 59.00 66 89.33 Changed Cro
Crp PF00325 Domain 12 2310 31.70 52 13.95 Changed Bacterial regulatory proteins, crp family
CRPA PF05745 Family 5 37 131.10 62 84.93 Changed Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA)
CRPV_capsid PF08762 Domain 7 192 163.40 32 24.60 Changed CRPV capsid protein like
CRS1_YhbY PF01985 Domain 144 3330 83.80 36 62.62 Changed CRS1 / YhbY (CRM) domain
CRT-like PF08627 Family 3 27 103.40 26 25.10 Changed CRT-like
CRT10 PF08728 Family 9 141 320.30 15 55.24 Changed CRT10
CrtC PF07143 Family 69 733 285.70 23 77.79 Changed Hydroxyneurosporene synthase (CrtC)
Crust_neurohorm PF01147 Family 45 264 69.90 40 61.43 Changed Crustacean CHH/MIH/GIH neurohormone family
Crust_neuro_H PF03858 Family 8 51 38.60 54 29.06 Changed Crustacean neurohormone H
CryBP1 PF07029 Family 5 45 155.90 37 85.48 Changed CryBP1 protein
Cryptochrome_C PF12546 Family 20 114 116.80 39 20.11 Changed Blue/Ultraviolet sensing protein C terminal
Crystall PF00030 Domain 138 3340 81.10 31 53.48 Changed Beta/Gamma crystallin
Crystallin PF00525 Family 11 395 51.50 65 39.75 Changed Alpha crystallin A chain, N terminal
Crystall_2 PF09076 Domain 10 18 71.90 35 65.99 Changed Beta/Gamma crystallin
Crystall_3 PF08964 Family 17 98 87.90 34 21.43 Changed Beta/Gamma crystallin
CS PF04969 Domain 100 2605 77.20 20 23.00 Changed CS domain
CsbD PF05532 Family 119 3357 53.50 36 76.85 Changed CsbD-like
CSD PF00313 Domain 40 14886 65.20 46 67.33 Changed 'Cold-shock' DNA-binding domain
Cse1 PF08506 Domain 15 650 300.30 24 31.98 Changed Cse1
CSF-1 PF05337 Family 9 118 226.10 38 95.29 Changed Macrophage colony stimulating factor-1 (CSF-1)
CsgE PF10627 Family 20 509 103.40 76 77.48 Changed Curli assembly protein CsgE
CsgF PF10614 Family 6 534 127.60 69 95.73 Changed Type VIII secretion system (T8SS), CsgF protein
CsgG PF03783 Family 61 1246 190.90 30 65.37 Changed Curli production assembly/transport component CsgG
CsiD PF08943 Domain 11 476 284.50 85 90.83 Changed CsiD
Csm1 PF12539 Family 29 121 91.60 39 22.85 Changed Chromosome segregation protein Csm1/Pcs1
CsoS2_M PF12288 Family 13 104 315.70 37 60.72 Changed Carboxysome shell peptide mid-region
CsoSCA PF08936 Domain 22 80 428.30 46 83.35 Changed Carboxysome Shell Carbonic Anhydrase
CsrA PF02599 Family 137 1995 53.20 54 75.78 Changed Global regulator protein family
CSS-motif PF12792 Domain 138 2685 205.10 21 40.43 Changed CSS motif domain associated with EAL
CST-I PF06002 Family 7 193 226.00 41 89.60 Changed Alpha-2,3-sialyltransferase (CST-I)
CstA PF02554 Family 97 3680 319.50 39 60.88 Changed Carbon starvation protein CstA
CSTF2_hinge PF14327 Family 52 428 82.30 36 19.13 Changed Hinge domain of cleavage stimulation factor subunit 2
CSTF_C PF14304 Domain 4 329 43.80 49 10.15 Changed Transcription termination and cleavage factor C-terminal
CT47 PF15623 Family 14 37 262.80 50 96.59 New Cancer/testis gene family 47
CtaG_Cox11 PF04442 Family 135 1018 143.90 41 68.61 Changed Cytochrome c oxidase assembly protein CtaG/Cox11
CTC1 PF15489 Family 13 86 701.10 36 91.14 New CST, telomere maintenance, complex subunit CTC1
CTC1_2 PF15491 Family 11 18 276.80 36 26.22 New CST, telomere maintenance, complex subunit CTC1
CTD PF12815 Domain 33 296 130.10 32 17.37 Changed Spt5 C-terminal nonapeptide repeat binding Spt4
CTDII PF01556 Domain 113 11443 77.70 31 24.15 Changed DnaJ C terminal domain
CTD_bind PF04818 Family 41 1005 63.20 28 8.67 Changed RNA polymerase II-binding domain.
Ctf8 PF09696 Family 31 267 116.80 29 75.80 Changed Ctf8
CTF_NFI PF00859 Family 4 440 227.10 51 56.35 Changed CTF/NF-I family transcription modulation region
CTI PF06934 Family 33 247 647.60 51 88.45 Changed Fatty acid cis/trans isomerase (CTI)
CtIP_N PF10482 Domain 4 111 115.10 67 16.20 Changed Tumour-suppressor protein CtIP N-terminal domain
CTK3 PF12243 Domain 9 129 134.20 37 32.69 Changed CTD kinase subunit gamma CTK3
CTK3_C PF12350 Domain 31 130 67.90 39 23.79 Changed CTD kinase subunit gamma CTK3 C-terminus
CtnDOT_TraJ PF07863 Family 15 330 62.30 53 19.65 Changed Homologues of TraJ from Bacteroides conjugative transposon
CTNNB1_binding PF08347 Family 18 496 168.80 45 42.31 Changed N-terminal CTNNB1 binding
CTNNBL PF08216 Domain 12 275 104.80 41 19.23 Changed Catenin-beta-like, Arm-motif containing nuclear
CTP-dep_RFKase PF01982 Family 44 155 120.50 38 62.91 Changed Domain of unknown function DUF120
CTP_synth_N PF06418 Family 98 5282 264.10 58 50.53 Changed CTP synthase N-terminus
CTP_transf_1 PF01148 Family 48 6283 255.40 24 86.77 Changed Cytidylyltransferase family
CTP_transf_2 PF01467 Domain 65 14199 142.60 19 60.12 Changed Cytidylyltransferase
CTP_transf_3 PF02348 Family 20 4289 213.60 26 80.94 Changed Cytidylyltransferase
Ctr PF04145 Family 116 1128 123.20 22 63.53 Changed Ctr copper transporter family
CtsR PF05848 Family 48 1181 148.80 48 97.41 Changed Firmicute transcriptional repressor of class III stress genes (CtsR)
CTV_P13 PF06922 Family 3 58 114.90 92 100.00 Changed Citrus tristeza virus P13 protein
CTV_P23 PF04808 Family 3 175 204.80 91 100.00 Changed Citrus tristeza virus (CTV) P23 protein
CTV_P33 PF07184 Family 2 230 201.30 88 100.00 Changed Citrus tristeza virus P33 protein
CTV_P6 PF06706 Family 2 15 50.70 86 98.70 Changed Citrus tristeza virus 6-kDa protein
CTX_RstB PF07459 Family 2 78 109.50 79 94.27 Changed CTX phage RstB protein
Cu-binding_MopE PF11617 Family 36 222 29.10 42 8.14 Changed Protein metal binding site
Cu-oxidase PF00394 Domain 72 9871 140.70 23 37.09 Changed Multicopper oxidase
Cu-oxidase_2 PF07731 Domain 127 6906 134.00 20 24.40 Changed Multicopper oxidase
Cu-oxidase_3 PF07732 Domain 121 9918 100.50 30 22.68 Changed Multicopper oxidase
Cu-oxidase_4 PF02578 Family 132 3547 224.90 32 89.31 Changed Multi-copper polyphenol oxidoreductase laccase
Cu2_monooxygen PF01082 Domain 38 534 124.70 27 21.58 Changed Copper type II ascorbate-dependent monooxygenase, N-terminal domain
Cu2_monoox_C PF03712 Domain 25 590 149.50 26 25.41 Changed Copper type II ascorbate-dependent monooxygenase, C-terminal domain
CUB PF00431 Domain 29 12961 107.50 26 32.62 Changed CUB domain
CUB_2 PF02408 Domain 24 264 113.70 19 25.57 Changed CUB-like domain
Cucumo_2B PF03263 Family 7 122 104.60 70 96.29 Changed Cucumovirus protein 2B
Cucumo_coat PF00760 Domain 4 531 188.50 85 95.29 Changed Cucumovirus coat protein
CUE PF02845 Family 132 1581 41.20 24 8.01 Changed CUE domain
Cul7 PF11515 Family 8 206 76.00 52 2.97 Changed Mouse development and cellular proliferation protein Cullin-7
Cullin PF00888 Family 47 2251 484.10 20 65.66 Changed Cullin family
Cullin_binding PF03556 Family 46 733 115.20 37 44.82 Changed Cullin binding
Cullin_Nedd8 PF10557 Domain 109 1474 66.30 42 8.55 Changed Cullin protein neddylation domain
Cupin_1 PF00190 Domain 225 3563 141.10 18 62.47 Changed Cupin
Cupin_2 PF07883 Domain 156 20335 70.00 18 38.76 Changed Cupin domain
Cupin_3 PF05899 Family 33 1583 76.00 27 46.50 Changed Protein of unknown function (DUF861)
Cupin_4 PF08007 Family 26 1723 287.10 32 65.62 Changed Cupin superfamily protein
Cupin_5 PF06172 Family 19 1200 132.00 40 81.62 Changed Cupin superfamily (DUF985)
Cupin_6 PF12852 Domain 212 1675 171.80 25 57.25 Changed Cupin
Cupin_7 PF12973 Domain 88 1076 89.10 27 55.05 Changed ChrR Cupin-like domain
Cupin_8 PF13621 Domain 90 2241 243.80 17 46.84 Changed Cupin-like domain
Cupredoxin_1 PF13473 Domain 62 2319 105.60 23 33.67 Changed Cupredoxin-like domain
Curlin_rpt PF07012 Repeat 22 2923 32.30 40 50.36 Changed Curlin associated repeat
Curto_V2 PF07325 Family 2 21 122.70 76 100.00 Changed Curtovirus V2 protein
Curto_V3 PF07436 Family 3 24 79.30 84 97.79 Changed Curtovirus V3 protein
CusF_Ec PF11604 Family 186 1350 68.20 33 32.48 Changed Copper binding periplasmic protein CusF
CUT PF02376 Domain 26 1069 84.90 35 19.88 Changed CUT domain
Cut12 PF11500 Domain 12 71 150.90 34 21.61 Changed Spindle pole body formation-associated protein
Cut8_C PF08559 Family 19 160 140.60 30 43.46 Changed Cut8 six-helix bundle
Cut8_M PF14483 Family 19 126 37.70 39 11.94 New Cut8 dimerisation domain
Cut8_N PF14482 Family 19 98 55.20 33 17.09 New Cut8 proteasome-binding domain
CutA1 PF03091 Family 13 1667 99.10 39 84.17 Changed CutA1 divalent ion tolerance protein
CutC PF03932 Family 8 2302 197.20 39 85.23 Changed CutC family
Cuticle_1 PF08140 Family 38 90 40.00 45 71.21 Changed Crustacean cuticle protein repeat
Cuticle_2 PF08184 Family 3 3 59.00 95 100.00 Changed Cuticle protein 7 isoform family
Cuticle_3 PF11018 Family 14 170 118.90 26 69.21 Changed Pupal cuticle protein C1
Cutinase PF01083 Domain 23 1537 189.00 24 66.18 Changed Cutinase
Cu_amine_oxid PF01179 Domain 75 1272 371.60 33 57.94 Changed Copper amine oxidase, enzyme domain
Cu_amine_oxidN1 PF07833 Domain 134 2772 86.20 21 23.12 Changed Copper amine oxidase N-terminal domain
Cu_amine_oxidN2 PF02727 Domain 14 944 87.20 27 12.37 Changed Copper amine oxidase, N2 domain
Cu_amine_oxidN3 PF02728 Domain 17 943 100.70 23 14.32 Changed Copper amine oxidase, N3 domain
Cu_bind_like PF02298 Domain 26 1166 82.90 31 43.81 Changed Plastocyanin-like domain
CVNH PF08881 Domain 34 277 104.10 24 56.75 Changed CVNH domain
CWC25 PF12542 Family 62 293 95.10 32 23.98 Changed Pre-mRNA splicing factor
cwf18 PF08315 Family 31 268 132.60 35 70.43 Changed cwf18 pre-mRNA splicing factor
cwf21 PF08312 Domain 76 461 48.80 38 7.17 Changed cwf21 domain
CwfJ_C_1 PF04677 Family 8 549 125.80 29 20.81 Changed Protein similar to CwfJ C-terminus 1
CwfJ_C_2 PF04676 Family 48 528 99.10 26 16.57 Changed Protein similar to CwfJ C-terminus 2
Cwf_Cwc_15 PF04889 Family 30 382 193.80 37 96.06 Changed Cwf15/Cwc15 cell cycle control protein
CW_binding_1 PF01473 Repeat 213 28133 18.80 40 20.20 Changed Putative cell wall binding repeat
CW_binding_2 PF04122 Repeat 99 3897 92.20 26 35.86 Changed Putative cell wall binding repeat 2
CX PF01705 Family 14 114 59.90 32 25.21 Changed CX module
CXCL17 PF15211 Family 6 23 89.40 67 76.13 New VEGF co-regulated chemokine 1
CXCR4_N PF12109 Domain 4 102 32.40 82 9.34 Changed CXCR4 Chemokine receptor N terminal
CXCXC PF03128 Repeat 116 305 13.90 43 10.39 Changed CXCXC repeat
CxxCxxCC PF03692 Family 35 4094 89.40 24 56.80 Changed Putative zinc- or iron-chelating domain
Cyanate_lyase PF02560 Domain 25 725 73.00 59 47.15 Changed Cyanate lyase C-terminal domain
CybS PF05328 Family 48 384 123.80 29 70.69 Changed CybS
Cyc-maltodext_C PF10438 Domain 32 208 79.20 31 13.36 Changed Cyclo-malto-dextrinase C-terminal domain
Cyc-maltodext_N PF09087 Domain 28 194 87.20 39 14.09 Changed Cyclomaltodextrinase, N-terminal
Cyclase PF04199 Family 76 2705 168.90 21 65.07 Changed Putative cyclase
Cyclase_polyket PF04673 Family 23 122 96.20 46 87.19 Changed Polyketide synthesis cyclase
Cyclin PF08613 Family 9 1457 153.60 21 39.34 Changed Cyclin
Cyclin_C PF02984 Domain 240 3032 116.40 20 28.12 Changed Cyclin, C-terminal domain
Cyclin_N PF00134 Domain 127 6213 123.90 20 31.34 Changed Cyclin, N-terminal domain
Cyclophil_like PF04126 Family 14 235 113.10 22 69.69 Changed Cyclophilin-like
Cyclotide PF03784 Domain 30 259 29.80 57 44.52 Changed Cyclotide family
Cyd_oper_YbgE PF09600 Family 21 679 80.50 64 85.54 Changed Cyd operon protein YbgE (Cyd_oper_YbgE)
Cylicin_N PF15241 Family 22 69 108.90 52 24.53 New Cylicin N-terminus
Cypo_polyhedrin PF05865 Family 2 14 247.00 95 99.77 Changed Cypovirus polyhedrin protein
CysG_dimeriser PF10414 Domain 132 1426 59.40 36 13.80 Changed Sirohaem synthase dimerisation region
Cystatin PF00031 Domain 43 2054 88.60 17 54.95 Changed Cystatin domain
CYSTM PF12734 Family 88 306 50.20 33 55.31 Changed Cysteine-rich TM module stress tolerance
Cys_knot PF00007 Domain 24 1416 92.30 29 44.70 Changed Cystine-knot domain
Cys_Met_Meta_PP PF01053 Domain 30 12248 368.30 34 93.53 Changed Cys/Met metabolism PLP-dependent enzyme
Cys_rich_CPCC PF14206 Family 25 243 68.40 37 67.44 Changed Cysteine-rich CPCC
Cys_rich_CPXG PF14255 Family 50 377 51.30 39 80.52 Changed Cysteine-rich CPXCG
Cys_rich_CWC PF14375 Family 76 321 50.50 33 57.01 Changed Cysteine-rich CWC
Cys_rich_FGFR PF00839 Family 85 1785 58.80 24 71.91 Changed Cysteine rich repeat
Cys_rich_KTR PF14205 Family 23 165 52.00 56 84.28 Changed Cysteine-rich KTR
Cys_rich_VLP PF14194 Family 20 192 54.90 55 41.26 Changed Cysteine-rich VLP
Cyt-b5 PF00173 Domain 210 5879 82.90 25 17.81 Changed Cytochrome b5-like Heme/Steroid binding domain
CytadhesinP1 PF12378 Family 8 115 70.30 42 13.09 Changed Trypsin-sensitive surface-exposed protein
Cytadhesin_P30 PF07271 Family 3 109 133.40 46 68.80 Changed Cytadhesin P30/P32
CytB6-F_Fe-S PF08802 Domain 19 215 37.50 46 19.78 Changed Cytochrome B6-F complex Fe-S subunit
CYTH PF01928 Domain 51 3690 182.60 21 64.24 Changed CYTH domain
Cytidylate_kin PF02224 Family 14 4159 155.70 40 63.80 Changed Cytidylate kinase
Cytidylate_kin2 PF13189 Domain 174 1110 168.30 26 77.44 Changed Cytidylate kinase-like family
CYTL1 PF15153 Family 9 49 123.40 55 96.34 New Cytokine-like protein 1
CytochromB561_N PF09786 Family 9 196 407.90 32 88.01 Changed Cytochrome B561, N terminal
Cytochrome-c551 PF10643 Family 7 19 172.00 39 84.60 Changed Photosystem P840 reaction-centre cytochrome c-551
Cytochrome_C554 PF13435 Family 93 858 122.30 16 25.29 Changed Cytochrome c554 and c-prime
Cytochrome_C7 PF14522 Family 198 1003 72.40 23 23.15 New Cytochrome c7
Cytochrome_cB PF11783 Family 41 134 171.90 31 31.52 Changed Cytochrome c bacterial
Cytochrome_CBB3 PF13442 Domain 488 9400 79.30 23 30.40 Changed Cytochrome C oxidase, cbb3-type, subunit III
Cytochrom_B558a PF05038 Family 4 85 159.20 60 95.33 Changed Cytochrome Cytochrome b558 alpha-subunit
Cytochrom_B559 PF00283 Family 8 2001 28.50 55 47.05 Changed Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
Cytochrom_B559a PF00284 Family 25 1065 39.70 82 49.73 Changed Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
Cytochrom_B561 PF03188 Family 48 1285 131.30 21 41.09 Changed Eukaryotic cytochrome b561
Cytochrom_B562 PF07361 Family 25 795 102.50 48 80.57 Changed Cytochrome b562
Cytochrom_B_C PF00032 Domain 114 70433 89.80 73 27.89 Changed Cytochrome b(C-terminal)/b6/petD
Cytochrom_B_N PF00033 Domain 92 8451 164.10 19 83.40 Changed Cytochrome b(N-terminal)/b6/petB
Cytochrom_B_N_2 PF13631 Domain 68 102102 142.10 66 51.21 Changed Cytochrome b(N-terminal)/b6/petB
Cytochrom_C PF00034 Domain 237 12531 94.00 18 36.97 Changed Cytochrome c
Cytochrom_C1 PF02167 Family 124 1691 190.90 30 70.78 Changed Cytochrome C1 family
Cytochrom_c3_2 PF14537 Family 85 1009 93.50 36 38.08 New Cytochrome c3
Cytochrom_C550 PF14495 Domain 49 117 133.90 48 82.64 New Cytochrome c-550 domain
Cytochrom_C552 PF02335 Family 38 1136 413.10 48 88.71 Changed Cytochrome c552
Cytochrom_CIII PF02085 Domain 24 410 94.70 21 46.57 Changed Class III cytochrome C family
Cytochrom_C_2 PF01322 Domain 95 629 114.10 23 73.21 Changed Cytochrome C'
Cytochrom_C_asm PF01578 Family 39 8917 196.50 21 51.54 Changed Cytochrome C assembly protein
Cytochrom_D1 PF02239 Domain 8 7650 221.80 52 91.82 Changed Cytochrome D1 heme domain
Cytochrom_NNT PF03264 Family 111 2644 166.30 41 59.71 Changed NapC/NirT cytochrome c family, N-terminal region
CytoC_RC PF02276 Family 25 104 250.30 32 79.94 Changed Photosynthetic reaction centre cytochrome C subunit
Cytokin-bind PF09265 Domain 18 278 242.40 36 52.73 Changed Cytokinin dehydrogenase 1, FAD and cytokinin binding
Cytokin_check_N PF10407 Family 16 70 73.10 37 7.39 Changed Cdc14 phosphatase binding protein N-terminus
Cytomega_gL PF01801 Family 7 80 204.20 59 82.04 Changed Cytomegalovirus glycoprotein L
Cytomega_TRL10 PF06084 Family 5 22 149.10 91 87.75 Changed Cytomegalovirus TRL10 protein
Cytomega_UL20A PF05984 Family 2 14 101.60 84 97.33 Changed Cytomegalovirus UL20A protein
Cytomega_UL84 PF06284 Family 4 46 419.40 53 97.45 Changed Cytomegalovirus UL84 protein
Cytomega_US3 PF05963 Family 3 63 179.40 54 97.57 Changed Cytomegalovirus US3 protein
Cytotoxic PF09000 Domain 5 56 81.20 38 15.33 Changed Cytotoxic
Cyto_heme_lyase PF01265 Family 46 463 246.90 36 87.58 Changed Cytochrome c/c1 heme lyase
Cyto_ox_2 PF02322 Family 134 4601 331.80 32 94.78 Changed Cytochrome oxidase subunit II
Cyt_c_ox_IV PF12270 Family 24 381 134.00 43 95.16 Changed Cytochrome c oxidase subunit IV
CZB PF13682 Domain 345 1282 71.70 26 17.09 Changed Chemoreceptor zinc-binding domain
C_GCAxxG_C_C PF09719 Family 81 793 120.90 26 77.02 Changed Putative redox-active protein (C_GCAxxG_C_C)
C_tripleX PF02363 Repeat 166 2125 17.40 42 36.77 Changed Cysteine rich repeat
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