HMMER3/b [3.0b2 | June 2009] NAME Copper-fist ACC PF00649.11 DESC Copper fist DNA binding domain LENG 40 ALPH amino RF no CS yes MAP yes DATE Tue Sep 8 09:47:14 2009 NSEQ 23 EFFN 2.265747 CKSUM 1287422101 GA 25.00 25.00; TC 43.10 43.10; NC 17.60 17.40; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 9421015 -E 1000 HMM pfamseq STATS LOCAL MSV -7.8057 0.71947 STATS LOCAL VITERBI -8.3793 0.71947 STATS LOCAL FORWARD -4.7576 0.71947 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.67192 2.65354 3.22817 2.94800 3.88854 2.73562 2.89073 2.93299 2.55678 2.90475 3.33533 3.33574 3.42239 3.36066 2.40037 2.68786 3.01997 2.76835 4.59260 3.77039 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.00000 * 1 3.91699 5.35964 5.13241 4.87196 3.94278 4.59319 5.41574 3.22951 4.59759 2.46910 0.37272 5.02537 5.11805 4.94528 4.68600 4.31328 4.27233 3.32382 5.83032 4.65497 1 - - 2.68619 4.42227 2.77521 2.73125 3.46355 2.40514 3.72496 3.29355 2.67742 2.69356 4.24691 2.90348 2.73715 3.18148 2.89802 2.37888 2.77521 2.98520 4.58478 3.61505 0.41014 2.77016 1.29539 0.34635 1.22849 0.48576 0.95510 2 3.07327 4.41495 4.80945 4.25533 3.56387 4.35830 4.78252 1.33453 4.12929 1.97240 3.43929 4.42285 3.58815 4.34163 4.27698 3.69469 3.31799 1.30653 5.32241 4.13928 3 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01840 4.40049 5.12283 0.61958 0.77255 0.36308 1.18919 3 3.14595 4.51239 3.27599 4.23833 3.61446 4.39048 4.76907 1.49275 4.12494 1.39482 3.50881 4.42394 4.71161 4.32819 4.28026 3.71233 3.38466 1.60723 5.33462 4.15609 4 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01403 4.66928 5.39163 0.61958 0.77255 0.57519 0.82690 4 2.88373 4.29879 4.52189 3.10108 2.66885 4.03797 4.35022 1.18593 3.79247 2.36510 3.37148 4.08058 4.39308 3.98555 3.91971 3.34043 3.11711 2.04599 4.93216 3.36352 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01403 4.66928 5.39163 0.61958 0.77255 0.57519 0.82690 5 3.14322 5.75662 1.30705 1.93752 5.06338 3.14458 3.99702 4.58567 2.61390 4.04546 4.83723 1.89323 4.12326 2.87246 3.47694 3.04300 3.40698 4.13200 6.18159 4.69124 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01403 4.66928 5.39163 0.61958 0.77255 0.57519 0.82690 6 3.33290 5.94756 2.04658 2.12455 5.26819 0.97805 4.15366 4.80682 3.20047 4.27980 5.12714 2.45551 4.21987 3.31931 3.82421 3.20701 3.63017 4.35188 6.43668 4.90223 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01403 4.66928 5.39163 0.61958 0.77255 0.57519 0.82690 7 2.49257 5.19533 2.68059 1.65616 4.50927 3.53964 3.73489 3.36608 2.16969 3.48701 4.24499 2.87445 3.93586 2.70435 2.97166 2.73740 2.99237 2.68750 5.64667 4.25448 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01403 4.66928 5.39163 0.61958 0.77255 0.57519 0.82690 8 3.47230 5.62144 3.50549 3.09889 5.14480 3.95719 4.07050 4.56899 0.60261 3.98362 4.86340 2.90108 4.41871 3.21557 2.60341 3.44906 3.68163 4.20841 5.96087 4.76495 9 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01403 4.66928 5.39163 0.61958 0.77255 0.57519 0.82690 9 4.22068 5.35509 5.34131 5.08568 2.14460 4.95666 3.88714 3.90078 4.88443 3.22292 3.46963 4.61820 5.23851 4.71913 4.80379 4.32392 4.42928 3.80972 1.30970 0.97637 10 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01403 4.66928 5.39163 0.61958 0.77255 0.43364 1.04453 10 0.51391 4.55668 4.34642 4.17417 5.04704 3.35042 5.08775 4.45976 4.21902 4.19687 5.00582 4.00986 4.18069 4.43573 4.40815 1.97517 3.19051 3.76421 6.40679 5.26939 11 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 11 3.90280 0.15445 5.44292 5.40322 5.34986 4.27854 5.89555 4.76126 5.29527 4.56828 5.73358 5.22958 5.02520 5.60140 5.24571 4.16812 4.43399 4.41542 6.46483 5.60795 12 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 12 2.56459 5.10069 2.39733 1.61940 4.37811 3.34388 3.77419 3.81603 2.54548 2.98136 3.43296 3.07529 3.96806 2.89943 3.02371 2.62470 3.00512 2.74323 5.57828 4.21242 13 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 13 1.95225 5.16458 3.06471 2.32554 4.46555 3.56063 3.75322 3.92098 2.21184 3.45094 4.21784 2.89520 2.92388 2.86635 2.74760 2.26204 2.69713 3.16589 5.62517 3.84043 14 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 14 3.90280 0.15445 5.44292 5.40322 5.34986 4.27854 5.89555 4.76126 5.29527 4.56828 5.73358 5.22958 5.02520 5.60140 5.24571 4.16812 4.43399 4.41542 6.46483 5.60795 15 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 15 3.63349 4.82389 5.71862 5.25178 4.12324 5.26695 5.99334 0.85616 5.19492 2.26850 3.85161 5.41945 5.46398 5.42697 5.35230 4.70436 3.89093 1.13117 6.26822 5.06895 16 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 16 3.81278 5.79919 4.47028 3.53166 5.44773 4.29787 4.04081 4.69505 1.60310 4.00747 4.91649 3.82249 4.61589 3.16948 0.64703 3.78585 3.90012 4.39859 5.93019 4.89178 17 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 17 2.79675 4.73063 3.99050 3.96109 5.25265 0.44598 5.11889 4.82377 4.26365 4.48804 5.29395 3.98597 4.27518 4.46028 4.48611 2.41883 3.35589 4.03585 6.54123 5.39680 18 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 18 4.37287 5.88819 4.40358 4.30631 4.29411 4.47496 0.20276 5.24006 4.15829 4.57817 5.74345 4.65436 5.09384 4.70567 4.33367 4.46280 4.73393 4.95361 5.70707 4.23677 19 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 19 3.81993 5.77485 4.43033 3.56329 5.40223 4.28954 4.08718 4.68920 1.94651 4.02105 4.93989 3.85333 4.63330 3.22296 0.53187 3.80583 3.92601 4.39353 5.94465 4.90094 20 - G 2.68626 4.42233 2.77527 2.73131 3.46361 2.40492 3.72502 3.29362 2.67748 2.69362 4.24697 2.90354 2.73707 3.18154 2.89762 2.37894 2.77527 2.98526 4.58484 3.61511 0.10131 2.38608 5.43677 0.94419 0.49265 0.48576 0.95510 20 2.15784 4.50255 4.16705 3.74523 4.29831 2.88310 4.61289 3.58908 3.70812 3.37872 4.25322 3.84410 4.16756 3.96744 3.98281 1.32146 3.11137 1.36803 5.73014 4.53805 24 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 21 2.08240 4.56703 4.18491 3.85197 4.89155 3.36129 4.82891 4.30289 3.84967 3.99931 4.80053 3.86880 4.14267 4.11227 4.13292 0.88996 1.59222 3.67765 6.22882 5.05374 25 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 22 2.65283 5.17523 3.06689 2.51619 4.48505 3.25927 3.76034 3.94083 2.14805 3.15053 4.23439 2.87614 3.96019 2.19935 2.98566 2.23465 1.96733 3.54868 5.63837 4.25740 26 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 23 3.90280 0.15445 5.44292 5.40322 5.34986 4.27854 5.89555 4.76126 5.29527 4.56828 5.73358 5.22958 5.02520 5.60140 5.24571 4.16812 4.43399 4.41542 6.46483 5.60795 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 24 2.77811 5.26679 2.87970 2.30827 4.60589 3.55144 3.49924 4.08451 1.86962 3.56741 4.30994 2.83654 3.94496 2.32503 2.57473 2.74383 2.07925 3.28854 5.70099 4.29818 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 25 4.37287 5.88819 4.40358 4.30631 4.29411 4.47496 0.20276 5.24006 4.15829 4.57817 5.74345 4.65436 5.09384 4.70567 4.33367 4.46280 4.73393 4.95361 5.70707 4.23677 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 26 2.40779 3.20033 3.40428 2.84235 3.17889 3.67982 3.31805 3.22850 2.81858 2.90707 3.77227 2.28775 4.06455 2.86723 3.23232 2.56492 2.19332 2.79947 5.23451 3.57335 30 - - 2.68619 4.42226 2.77521 2.73124 3.46355 2.40514 3.72496 3.29355 2.67742 2.69356 4.24691 2.90323 2.73741 3.18148 2.89802 2.37888 2.77521 2.98520 4.58478 3.61504 0.15139 2.93543 2.43751 0.37559 1.16119 0.48576 0.95510 27 3.10562 5.70745 1.33856 1.89464 5.01333 2.18313 3.46212 4.53202 2.87531 3.99666 4.78724 2.57388 4.09418 2.85880 3.43900 3.00925 3.36820 4.08230 6.13558 4.65027 32 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01463 4.62775 5.35010 0.61958 0.77255 0.64784 0.74060 28 3.06824 5.24908 3.46820 2.89024 4.70164 3.30325 3.89724 4.08755 2.34896 3.59291 4.42283 3.34285 4.18341 2.65663 1.04190 3.08345 2.45892 3.73301 5.71205 4.46570 33 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01463 4.62775 5.35010 0.61958 0.77255 0.64784 0.74060 29 2.53640 4.47012 3.61579 2.67816 3.60169 3.72329 3.97667 2.96169 3.00136 2.21184 2.70026 3.45851 2.02578 3.30844 3.35357 2.97004 2.97946 2.73938 5.04961 2.85675 34 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01463 4.62775 5.35010 0.61958 0.77255 0.64784 0.74060 30 3.07137 4.54251 4.52692 3.97116 3.38843 4.15873 4.52777 2.64729 3.80759 0.93956 2.37959 4.18442 4.52106 4.03849 3.97665 2.52902 3.32026 2.61080 5.12907 3.96623 35 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01463 4.62775 5.35010 0.61958 0.77255 0.64784 0.74060 31 2.73888 4.23581 4.13076 3.54658 2.89034 3.82921 3.57022 2.21224 2.98059 2.22813 2.84553 3.78200 4.19974 3.32609 3.64104 2.50802 2.58442 1.94568 4.84484 3.29825 36 - E 2.68628 4.42236 2.77530 2.73134 3.46364 2.40523 3.72505 3.29293 2.67751 2.69287 4.24700 2.90357 2.73750 3.18157 2.89811 2.37868 2.77530 2.98529 4.58487 3.61514 0.11463 2.26766 5.35010 1.16700 0.37295 0.39631 1.11718 32 2.77344 5.24296 3.03889 2.17513 4.57352 3.55219 3.21836 3.41808 1.98997 3.54056 3.55032 3.02613 3.13811 2.49381 2.28182 2.35771 3.00398 3.62590 5.68304 4.28447 41 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 33 3.16294 4.48185 5.08721 4.51636 2.61825 4.45619 4.86043 1.52671 4.36029 2.17656 3.53549 4.58700 4.77388 4.52335 4.42996 3.79189 2.55161 1.19764 5.33100 4.15129 42 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 34 2.69752 5.20155 3.09751 2.53604 4.51749 3.58467 3.76271 3.97074 2.02218 3.48863 3.10464 2.64738 3.25471 2.87430 1.82496 2.36960 3.03038 3.57772 5.64925 4.27553 43 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 35 2.85749 5.27525 3.14056 2.57526 4.62635 3.61989 3.77884 4.07922 1.67662 3.56977 4.33479 2.85268 2.63731 2.88650 2.08569 2.69127 2.35752 3.67361 5.70216 4.33874 44 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 36 2.65315 5.44494 3.52943 2.89044 4.89237 3.85360 3.88223 4.27819 1.11463 3.72080 4.53264 3.35564 3.28210 2.99885 1.71672 3.13729 3.35275 3.90556 5.78802 4.53933 45 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 37 2.75503 4.69400 4.00269 3.95139 5.23637 0.51758 5.09354 4.78776 4.23222 4.45036 5.24555 3.96322 4.24551 4.42552 4.46172 2.08049 3.31283 3.99651 6.53336 5.38646 46 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 38 4.24887 5.87320 4.83864 4.25764 5.46753 4.46723 4.81556 5.14889 3.06968 4.50623 5.53877 4.52567 4.98044 4.04652 0.22890 4.33221 4.49074 4.84534 6.23423 5.28867 47 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 39 2.17061 4.87891 3.48946 3.23315 4.76741 3.54540 4.42628 4.15525 2.77202 3.80970 4.66314 3.58177 0.81089 3.64449 3.54291 3.00726 3.29920 3.69868 6.03406 4.78358 48 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01341 4.71443 5.43677 0.61958 0.77255 0.48576 0.95510 40 2.19767 4.44868 3.72510 3.15586 2.67030 3.44276 4.03161 2.77150 2.85160 2.09128 3.55473 3.05041 3.40988 3.39533 3.43649 2.29847 3.00397 2.35999 5.03691 3.81071 49 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00905 4.71006 * 0.61958 0.77255 0.00000 * //