Summary

This is the summary of UniProt entry SYD_ECOSM (B1LD05).

Description:

Aspartate--tRNA ligase EC=6.1.1.12

Source organism:

Escherichia coli (strain SMS-3-5 / SECEC) (NCBI taxonomy ID 439855)
View Pfam proteome data.

Length:

590 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source	Domain	Start	End	Gathering threshold (bits)		Score (bits)		E-value
Source	Domain	Start	End	Sequence	Domain	Sequence	Domain	Sequence	Domain
Pfam A	tRNA_anti-codon	18	102	20.40	20.40	60.10	58.90	2.1e-13	5e-13
Pfam A	tRNA-synt_2	117	559	19.90	19.90	438.90	438.60	1.4e-128	1.6e-128
disorder	n/a	283	284	n/a	n/a	n/a	n/a	n/a	n/a
Pfam A	GAD	307	406	21.10	21.10	108.90	108.10	1.5e-28	2.8e-28
disorder	n/a	444	450	n/a	n/a	n/a	n/a	n/a	n/a
disorder	n/a	456	458	n/a	n/a	n/a	n/a	n/a	n/a

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

We generate the topmost image from data in the Pfam database, but subsequent images are constructed on-the-fly using data retrieved from other sources using the Distributed Annotation System (DAS). DAS is a system for sharing sequence annotations in a standard format and we use it to find features and sequence information from a wide variety of other sources, from UniProt to InterPro to Superfamily.

Each DAS source is represented in a new track, although some sources may generate more than one track, if they have features which overlap. Each feature that we find is shown as a simple box, positioned according to its residue position on the sequence.

Moving your mouse over a feature in the display will highlight the feature and show a tooltip giving details of the feature. If the DAS source supplied a URL, you can also click on the feature to visit that URL. In some browsers you will also see a thin, vertical cursor, which follows the mouse and shows the residue position within the sequence.

You can turn DAS sources on and off using the control panel under the sequence images. Check the boxes for the DAS sources that you want to see; uncheck those that you are not interested in. Press Update to query the new set of DAS sources and re-generate the image. Note that if you have lots of sources turned on, the time taken to generate the images will increase. You can see the homepage for each of the DAS sources by clicking on its name in the update panel. The "source" link next to each source points directly at the DAS source. Depending on how the source is configured, that link may return some usage information or simply an XML fragment with the response to the empty query that you just made.

Please note: this is an experimental feature and there are several known bugs and limitations. Please be patient as we improve the tool.

Note: it can take a few seconds for this image to be generated and loaded.

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession B1LD05. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:

MRTEYCGQLR LSHVGQQVTL CGWVNRRRDL GSLIFIDMRD REGIVQVFFD

PDRADALKLA SELRNEFCIQ VTGTVRARDE KNINRDMATG EIEVLASSLT

100

101

IINRADVLPL DSNHVNTEEA RLKYRYLDLR RPEMAQRLKT RAKITSLVRR

150

151

FMDDHGFLDI ETPMLTKATP EGARDYLVPS RVHKGKFYAL PQSPQLFKQL

200

201

LMMSGFDRYY QIVKCFRDED LRADRQPEFT QIDVETSFMT APQVREVMEA

250

251

LVRHLWLEVK GVDLGDFPVM TFAEAERRYG SDKPDLRNPM ELTDVADLLK

300

301

SVEFAVFAGP ANDPKGRVAA LRVPGGASLT RKQIDEYGNF VKIYGAKGLA

350

351

YIKVNERAKG LEGINSPVAK FLNAEIIEAI LDRTAAQDGD MIFFGADNKK

400

401

IVADAMGALR LKVGKDLGLT DESKWAPLWV IDFPMFEDDG EGGLTAMHHP

450

451

FTSPKDMTAA ELKAAPENAV ANAYDMVING YEVGGGSVRI HNGDMQQTVF

500

501

GILGINEEEQ REKFGFLLDA LKYGTPPHAG LAFGLDRLTM LLTGTDNIRD

550

551

VIAFPKTTAA ACLMTEAPSF ANPTALAELS IQVVKKAENN

590

Show the unformatted sequence.

Checksums:

CRC64:5614F3B2D86AC132

MD5:a877fa7b187036f56868174ce8f61012

Protein: SYD_ECOSM (B1LD05)

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Summary

Pfam domains

Sequence annotations

Sequence information