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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: DDL_BURA4 (B1YSS6)

Summary

This is the summary of UniProt entry DDL_BURA4 (B1YSS6).

Description: D-alanine--D-alanine ligase EC=6.3.2.4
Source organism: Burkholderia ambifaria (strain MC40-6) (NCBI taxonomy ID 398577)
View Pfam proteome data.
Length: 313 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Dala_Dala_lig_N 10 63
Pfam A Dala_Dala_lig_N 50 93
Pfam A Dala_Dala_lig_C 110 308
low_complexity n/a 164 175

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession B1YSS6. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSGIDPKRFG KVAVLFGGES AEREVSLTSG RLVLQGLRDA GIDAHPFDPA
50
51
ERPLSALKDE GFVRAFNALH GGYGENGQIQ GALDFYGIRY TGSGVLGSAL
100
101
GLDKFRTKLV WQQTGVPTPP FETVMRGDDY AARATDIVAK LGLPLFVKPA
150
151
SEGSSVAVLK VKTADALPAA LSEAATHDKI VIVEKSIEGG GEYTACIAGD
200
201
LDLPLIKIVP AGEFYDYHAK YVANDTQYLI PCGLPAEQET ELKRIARRAF
250
251
DVLGCTDWGR ADFMLDAAGN AYFLEVNTAP GMTDHSLPPK AARSIGIGYS
300
301
ELVVKVLSLT LND                                        
313
 

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Checksums:
CRC64:494D539CF13A281A
MD5:50e12de8abf3a7c25d60ecf63b3ef398

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Dala_Dala_lig_C 110 - 308 4EG0 A 110 - 308 Jmol AstexViewer SPICE
B 110 - 308 Jmol AstexViewer SPICE
Dala_Dala_lig_N 10 - 63 4EG0 A 10 - 63 Jmol AstexViewer SPICE
B 10 - 63 Jmol AstexViewer SPICE
50 - 93 4EG0 A 50 - 93 Jmol AstexViewer SPICE
B 50 - 93 Jmol AstexViewer SPICE