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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: TRPA_VIBCM (C3LLL5)

Summary

This is the summary of UniProt entry TRPA_VIBCM (C3LLL5).

Description: Tryptophan synthase alpha chain EC=4.2.1.20
Source organism: Vibrio cholerae serotype O1 (strain M66-2) (NCBI taxonomy ID 579112)
View Pfam proteome data.
Length: 268 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Trp_syntA 8 267
low_complexity n/a 223 236

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession C3LLL5. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MNRYQALFQR LSAAQQGAFV PFVTIGDPNP EQSLAIMQTL IDAGADALEL
50
51
GMPFSDPLAD GPTIQGANLR ALAAKTTPDI CFELIAQIRA RNPETPIGLL
100
101
MYANLVYARG IDDFYQRCQK AGVDSVLIAD VPTNESQPFV AAAEKFGIQP
150
151
IFIAPPTASD ETLRAVAQLG KGYTYLLSRA GVTGAETKAN MPVHALLERL
200
201
QQFDAPPALL GFGISEPAQV KQAIEAGAAG AISGSAVVKI IETHLDNPAK
250
251
QLTELANFTQ AMKKATKI                                   
268
 

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Checksums:
CRC64:A04BEA6FAEECB028
MD5:da5d7d7546e9624818ce7167156d44e3

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Trp_syntA 8 - 267 3NAV A 8 - 267 Jmol AstexViewer SPICE
B 8 - 267 Jmol AstexViewer SPICE