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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RGYR_ARCFU (O29238)

Summary

This is the summary of UniProt entry RGYR_ARCFU (O29238).

Description: Reverse gyrase Helicase Topoisomerase EC=3.6.4.12 EC=5.99.1.3
Source organism: Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (NCBI taxonomy ID 224325)
View Pfam proteome data.
Length: 1054 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A DEAD 58 234
low_complexity n/a 176 185
low_complexity n/a 448 462
Pfam A Toprim 507 661
disorder n/a 602 603
Pfam A Topoisom_bac 675 1044
low_complexity n/a 762 773
disorder n/a 771 774

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession O29238. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MIPVVYSNLC PVCGGDLESK EIEKHVCFRK KRSLCLFPED FLLKEFVEFF
50
51
RKCVGEPRAI QKMWAKRILR KESFAATAPT GVGKTSFGLA MSLFLALKGK
100
101
RCYVIFPTSL LVIQAAETIR KYAEKAGVGT ENLIGYYHGR IPKREKENFM
150
151
QNLRNFKIVI TTTQFLSKHY RELGHFDFIF VDDVDAILKA SKNVDKLLHL
200
201
LGFHYDLKTK SWVGEARGCL MVSTATAKKG KKAELFRQLL NFDIGSSRIT
250
251
VRNVEDVAVN DESISTLSSI LEKLGTGGII YARTGEEAEE IYESLKNKFR
300
301
IGIVTATKKG DYEKFVEGEI DHLIGTAHYY GTLVRGLDLP ERIRFAVFVG
350
351
CPSFRVTIED IDSLSPQMVK LLAYLYRNVD EIERLLPAVE RHIDEVREIL
400
401
KKVMGKERPQ AKDVVVREGE VIFPDLRTYI QGSGRTSRLF AGGLTKGASF
450
451
LLEDDSELLS AFIERAKLYD IEFKSIDEVD FEKLSRELDE SRDRYRRRQE
500
501
FDLIKPALFI VESPTKARQI SRFFGKPSVK VLDGAVVYEI PMQKYVLMVT
550
551
ASIGHVVDLI TNRGFHGVLV NGRFVPVYAS IKRCRDCGYQ FTEDRESCPK
600
601
CGSENVDNSR SRIEALRKLA HDAEFVIVGT DPDTEGEKIA WDLKNLLSGC
650
651
GAVKRAEFHE VTRRAILEAL ESLRDVDENL VKAQVVRRIE DRWIGFVLSQ
700
701
KLWERFNNRN LSAGRAQTPV LGWIIDRFQE SRERRKIAIV RDFDLVLEHD
750
751
EEEFDLTIKL VEEREELRTP LPPYTTETML SDANRILKFS VKQTMQIAQE
800
801
LFENGLITYH RTDSTRVSDV GQRIAKEYLG DDFVGREWGE SGAHECIRPT
850
851
RPLTRDDVQR LIQEGVLVVE GLRWEHFALY DLIFRRFMAS QCRPFKVVVK
900
901
KYSIEFDGKT AEEERIVRAE GRAYELYRAV WVKNELPTGT FRVKAEVKSV
950
951
PKVLPFTQSE IIQMMKERGI GRPSTYATIV DRLFMRNYVV EKYGRMIPTK
1000
1001
LGIDVFRFLV RRYAKFVSED RTRDLESRMD AIERGELDYL KALEDLYAEI
1050
1051
KSID                                                  
1054
 

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Checksums:
CRC64:551F19ADD62D7175
MD5:18cff9ce1385adb964f228ed31ea7bb4

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
DEAD 58 - 234 1GKU B 58 - 234 Jmol AstexViewer SPICE
1GL9 B 58 - 234 Jmol AstexViewer SPICE
C 58 - 234 Jmol AstexViewer SPICE
Topoisom_bac 675 - 1044 1GKU B 675 - 1044 Jmol AstexViewer SPICE
1GL9 B 675 - 1044 Jmol AstexViewer SPICE
C 675 - 1044 Jmol AstexViewer SPICE
Toprim 507 - 661 1GKU B 507 - 661 Jmol AstexViewer SPICE
1GL9 B 507 - 661 Jmol AstexViewer SPICE
C 507 - 661 Jmol AstexViewer SPICE