Summary
This is the summary of UniProt entry RGYR_ARCFU (O29238).
| Description: | Reverse gyrase Helicase Topoisomerase EC=3.6.4.12 EC=5.99.1.3 |
| Source organism: |
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(NCBI taxonomy ID
224325)
View Pfam proteome data. |
| Length: | 1054 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| Pfam A | DEAD | 58 | 234 |
| low_complexity | n/a | 176 | 185 |
| low_complexity | n/a | 448 | 462 |
| Pfam A | Toprim | 507 | 661 |
| disorder | n/a | 602 | 603 |
| Pfam A | Topoisom_bac | 675 | 1044 |
| low_complexity | n/a | 762 | 773 |
| disorder | n/a | 771 | 774 |
Show or hide domain scores.
Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
Note: it can take a few seconds for this image to be generated and loaded.
Show sources update panel.
Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession O29238. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MIPVVYSNLC PVCGGDLESK EIEKHVCFRK KRSLCLFPED FLLKEFVEFF
50 51
RKCVGEPRAI QKMWAKRILR KESFAATAPT GVGKTSFGLA MSLFLALKGK
100 101
RCYVIFPTSL LVIQAAETIR KYAEKAGVGT ENLIGYYHGR IPKREKENFM
150 151
QNLRNFKIVI TTTQFLSKHY RELGHFDFIF VDDVDAILKA SKNVDKLLHL
200 201
LGFHYDLKTK SWVGEARGCL MVSTATAKKG KKAELFRQLL NFDIGSSRIT
250 251
VRNVEDVAVN DESISTLSSI LEKLGTGGII YARTGEEAEE IYESLKNKFR
300 301
IGIVTATKKG DYEKFVEGEI DHLIGTAHYY GTLVRGLDLP ERIRFAVFVG
350 351
CPSFRVTIED IDSLSPQMVK LLAYLYRNVD EIERLLPAVE RHIDEVREIL
400 401
KKVMGKERPQ AKDVVVREGE VIFPDLRTYI QGSGRTSRLF AGGLTKGASF
450 451
LLEDDSELLS AFIERAKLYD IEFKSIDEVD FEKLSRELDE SRDRYRRRQE
500 501
FDLIKPALFI VESPTKARQI SRFFGKPSVK VLDGAVVYEI PMQKYVLMVT
550 551
ASIGHVVDLI TNRGFHGVLV NGRFVPVYAS IKRCRDCGYQ FTEDRESCPK
600 601
CGSENVDNSR SRIEALRKLA HDAEFVIVGT DPDTEGEKIA WDLKNLLSGC
650 651
GAVKRAEFHE VTRRAILEAL ESLRDVDENL VKAQVVRRIE DRWIGFVLSQ
700 701
KLWERFNNRN LSAGRAQTPV LGWIIDRFQE SRERRKIAIV RDFDLVLEHD
750 751
EEEFDLTIKL VEEREELRTP LPPYTTETML SDANRILKFS VKQTMQIAQE
800 801
LFENGLITYH RTDSTRVSDV GQRIAKEYLG DDFVGREWGE SGAHECIRPT
850 851
RPLTRDDVQR LIQEGVLVVE GLRWEHFALY DLIFRRFMAS QCRPFKVVVK
900 901
KYSIEFDGKT AEEERIVRAE GRAYELYRAV WVKNELPTGT FRVKAEVKSV
950 951
PKVLPFTQSE IIQMMKERGI GRPSTYATIV DRLFMRNYVV EKYGRMIPTK
1000 1001
LGIDVFRFLV RRYAKFVSED RTRDLESRMD AIERGELDYL KALEDLYAEI
1050 1051
KSID
1054
Show the unformatted sequence. |
| Checksums: |
CRC64:551F19ADD62D7175
MD5:18cff9ce1385adb964f228ed31ea7bb4
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.
| Pfam family | UniProt residues | PDB ID | PDB chain ID | PDB residues | View |
|---|---|---|---|---|---|
| DEAD | 58 - 234 | 1GKU | B | 58 - 234 | Jmol AstexViewer SPICE |
| 1GL9 | B | 58 - 234 | Jmol AstexViewer SPICE | ||
| C | 58 - 234 | Jmol AstexViewer SPICE | |||
| Topoisom_bac | 675 - 1044 | 1GKU | B | 675 - 1044 | Jmol AstexViewer SPICE |
| 1GL9 | B | 675 - 1044 | Jmol AstexViewer SPICE | ||
| C | 675 - 1044 | Jmol AstexViewer SPICE | |||
| Toprim | 507 - 661 | 1GKU | B | 507 - 661 | Jmol AstexViewer SPICE |
| 1GL9 | B | 507 - 661 | Jmol AstexViewer SPICE | ||
| C | 507 - 661 | Jmol AstexViewer SPICE |