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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: PRKN2_HUMAN (O60260)

Summary

This is the summary of UniProt entry PRKN2_HUMAN (O60260).

Description: E3 ubiquitin-protein ligase parkin EC=6.3.2.-
Source organism: Homo sapiens (Human)
Length: 465 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A ubiquitin 6 73
disorder n/a 77 99
disorder n/a 106 107
disorder n/a 122 136
Pfam A IBR 310 378
low_complexity n/a 395 406
Pfam A IBR 396 459
disorder n/a 403 406

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession O60260. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MIVFVRFNSS HGFPVEVDSD TSIFQLKEVV AKRQGVPADQ LRVIFAGKEL
50
51
RNDWTVQNCD LDQQSIVHIV QRPWRKGQEM NATGGDDPRN AAGGCEREPQ
100
101
SLTRVDLSSS VLPGDSVGLA VILHTDSRKD SPPAGSPAGR SIYNSFYVYC
150
151
KGPCQRVQPG KLRVQCSTCR QATLTLTQGP SCWDDVLIPN RMSGECQSPH
200
201
CPGTSAEFFF KCGAHPTSDK ETSVALHLIA TNSRNITCIT CTDVRSPVLV
250
251
FQCNSRHVIC LDCFHLYCVT RLNDRQFVHD PQLGYSLPCV AGCPNSLIKE
300
301
LHHFRILGEE QYNRYQQYGA EECVLQMGGV LCPRPGCGAG LLPEPDQRKV
350
351
TCEGGNGLGC GFAFCRECKE AYHEGECSAV FEASGTTTQA YRVDERAAEQ
400
401
ARWEAASKET IKKTTKPCPR CHVPVEKNGG CMHMKCPQPQ CRLEWCWNCG
450
451
CEWNRVCMGD HWFDV                                      
465
 

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Checksums:
CRC64:9A8BB802A3FC84C3
MD5:74008e43a190fa944acb40b74551081a

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
IBR 310 - 378 2JMO A 6 - 74 Jmol AstexViewer SPICE
ubiquitin 6 - 73 1IYF A 6 - 73 Jmol AstexViewer SPICE