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5  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RBL_PYRKO (O93627)

Summary

This is the summary of UniProt entry RBL_PYRKO (O93627).

Description: Ribulose bisphosphate carboxylase EC=4.1.1.39
Source organism: Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1)) (NCBI taxonomy ID 69014)
View Pfam proteome data.
Length: 444 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RuBisCO_large_N 10 134
Pfam A RuBisCO_large 142 442
coiled_coil n/a 199 219
disorder n/a 399 403

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession O93627. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MVEKFDTIYD YYVDKGYEPS KKRDIIAVFR VTPAEGYTIE QAAGAVAAES
50
51
STGTWTTLYP WYEQERWADL SAKAYDFHDM GDGSWIVRIA YPFHAFEEAN
100
101
LPGLLASIAG NIFGMKRVKG LRLEDLYFPE KLIREFDGPA FGIEGVRKML
150
151
EIKDRPIYGV VPKPKVGYSP EEFEKLAYDL LSNGADYMKD DENLTSPWYN
200
201
RFEERAEIMA KIIDKVENET GEKKTWFANI TADLLEMEQR LEVLADLGLK
250
251
HAMVDVVITG WGALRYIRDL AADYGLAIHG HRAMHAAFTR NPYHGISMFV
300
301
LAKLYRLIGI DQLHVGTAGA GKLEGGKWDV IQNARILRES HYKPDENDVF
350
351
HLEQKFYSIK AAFPTSSGGL HPGNIQPVIE ALGTDIVLQL GGGTLGHPDG
400
401
PAAGARAVRQ AIDAIMQGIP LDEYAKTHKE LARALEKWGH VTPV      
444
 

Show the unformatted sequence.

Checksums:
CRC64:6E3AFF37367DD7FE
MD5:2d05078c48f83df48087452cd135daf3

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RuBisCO_large 142 - 442 1GEH A 142 - 442 Jmol AstexViewer SPICE
B 142 - 442 Jmol AstexViewer SPICE
C 142 - 442 Jmol AstexViewer SPICE
D 142 - 442 Jmol AstexViewer SPICE
E 142 - 442 Jmol AstexViewer SPICE
3A12 A 142 - 442 Jmol AstexViewer SPICE
B 142 - 442 Jmol AstexViewer SPICE
C 142 - 442 Jmol AstexViewer SPICE
D 142 - 442 Jmol AstexViewer SPICE
E 142 - 442 Jmol AstexViewer SPICE
F 142 - 442 Jmol AstexViewer SPICE
G 142 - 442 Jmol AstexViewer SPICE
H 142 - 442 Jmol AstexViewer SPICE
I 142 - 442 Jmol AstexViewer SPICE
J 142 - 442 Jmol AstexViewer SPICE
3A13 A 142 - 442 Jmol AstexViewer SPICE
B 142 - 442 Jmol AstexViewer SPICE
C 142 - 442 Jmol AstexViewer SPICE
D 142 - 442 Jmol AstexViewer SPICE
E 142 - 442 Jmol AstexViewer SPICE
F 142 - 442 Jmol AstexViewer SPICE
G 142 - 442 Jmol AstexViewer SPICE
H 142 - 442 Jmol AstexViewer SPICE
I 142 - 442 Jmol AstexViewer SPICE
J 142 - 442 Jmol AstexViewer SPICE
3KDN A 142 - 442 Jmol AstexViewer SPICE
B 142 - 442 Jmol AstexViewer SPICE
C 142 - 442 Jmol AstexViewer SPICE
D 142 - 442 Jmol AstexViewer SPICE
E 142 - 442 Jmol AstexViewer SPICE
F 142 - 442 Jmol AstexViewer SPICE
G 142 - 442 Jmol AstexViewer SPICE
H 142 - 442 Jmol AstexViewer SPICE
I 142 - 442 Jmol AstexViewer SPICE
J 142 - 442 Jmol AstexViewer SPICE
3KDO A 142 - 442 Jmol AstexViewer SPICE
B 142 - 442 Jmol AstexViewer SPICE
C 142 - 442 Jmol AstexViewer SPICE
D 142 - 442 Jmol AstexViewer SPICE
E 142 - 442 Jmol AstexViewer SPICE
F 142 - 442 Jmol AstexViewer SPICE
G 142 - 442 Jmol AstexViewer SPICE
H 142 - 442 Jmol AstexViewer SPICE
I 142 - 442 Jmol AstexViewer SPICE
J 142 - 442 Jmol AstexViewer SPICE
RuBisCO_large_N 10 - 134 3A12 A 10 - 134 Jmol AstexViewer SPICE
B 10 - 134 Jmol AstexViewer SPICE
C 10 - 134 Jmol AstexViewer SPICE
D 10 - 134 Jmol AstexViewer SPICE
E 10 - 134 Jmol AstexViewer SPICE
F 10 - 134 Jmol AstexViewer SPICE
G 10 - 134 Jmol AstexViewer SPICE
H 10 - 134 Jmol AstexViewer SPICE
I 10 - 134 Jmol AstexViewer SPICE
J 10 - 134 Jmol AstexViewer SPICE
3A13 A 10 - 134 Jmol AstexViewer SPICE
B 10 - 134 Jmol AstexViewer SPICE
C 10 - 134 Jmol AstexViewer SPICE
D 10 - 134 Jmol AstexViewer SPICE
E 10 - 134 Jmol AstexViewer SPICE
F 10 - 134 Jmol AstexViewer SPICE
G 10 - 134 Jmol AstexViewer SPICE
H 10 - 134 Jmol AstexViewer SPICE
I 10 - 134 Jmol AstexViewer SPICE
J 10 - 134 Jmol AstexViewer SPICE
3KDN A 10 - 134 Jmol AstexViewer SPICE
B 10 - 134 Jmol AstexViewer SPICE
C 10 - 134 Jmol AstexViewer SPICE
D 10 - 134 Jmol AstexViewer SPICE
E 10 - 134 Jmol AstexViewer SPICE
F 10 - 134 Jmol AstexViewer SPICE
G 10 - 134 Jmol AstexViewer SPICE
H 10 - 134 Jmol AstexViewer SPICE
I 10 - 134 Jmol AstexViewer SPICE
J 10 - 134 Jmol AstexViewer SPICE
3KDO A 10 - 134 Jmol AstexViewer SPICE
B 10 - 134 Jmol AstexViewer SPICE
C 10 - 134 Jmol AstexViewer SPICE
D 10 - 134 Jmol AstexViewer SPICE
E 10 - 134 Jmol AstexViewer SPICE
F 10 - 134 Jmol AstexViewer SPICE
G 10 - 134 Jmol AstexViewer SPICE
H 10 - 134 Jmol AstexViewer SPICE
I 10 - 134 Jmol AstexViewer SPICE
J 10 - 134 Jmol AstexViewer SPICE
12 - 134 1GEH A 12 - 134 Jmol AstexViewer SPICE
B 12 - 134 Jmol AstexViewer SPICE
C 12 - 134 Jmol AstexViewer SPICE
D 12 - 134 Jmol AstexViewer SPICE
E 12 - 134 Jmol AstexViewer SPICE