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9  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: AMY1_HORVU (P00693)

Summary

This is the summary of UniProt entry AMY1_HORVU (P00693).

Description: Alpha-amylase type A isozyme EC=3.2.1.1
Source organism: Hordeum vulgare (Barley) (NCBI taxonomy ID 4513)
Length: 438 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 24
low_complexity n/a 5 24
Pfam A Alpha-amylase 42 350
disorder n/a 231 232
disorder n/a 238 245
Pfam A Alpha-amyl_C2 368 428

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P00693. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MGKNGSLCCF SLLLLLLLAG LASGHQVLFQ GFNWESWKQS GGWYNMMMGK
50
51
VDDIAAAGVT HVWLPPPSHS VSNEGYMPGR LYDIDASKYG NAAELKSLIG
100
101
ALHGKGVQAI ADIVINHRCA DYKDSRGIYC IFEGGTSDGR LDWGPHMICR
150
151
DDTKYSDGTA NLDTGADFAA APDIDHLNDR VQRELKEWLL WLKSDLGFDA
200
201
WRLDFARGYS PEMAKVYIDG TSPSLAVAEV WDNMATGGDG KPNYDQDAHR
250
251
QNLVNWVDKV GGAASAGMVF DFTTKGILNA AVEGELWRLI DPQGKAPGVM
300
301
GWWPAKAATF VDNHDTGSTQ AMWPFPSDKV MQGYAYILTH PGIPCIFYDH
350
351
FFNWGFKDQI AALVAIRKRN GITATSALKI LMHEGDAYVA EIDGKVVVKI
400
401
GSRYDVGAVI PAGFVTSAHG NDYAVWEKNG AAATLQRS             
438
 

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Checksums:
CRC64:2393FDAC51E80F51
MD5:b028590ad48fb940a0c0d372d3f521d2

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Alpha-amyl_C2 368 - 428 1HT6 A 344 - 404 Jmol AstexViewer SPICE
1P6W A 344 - 404 Jmol AstexViewer SPICE
1RP8 A 344 - 404 Jmol AstexViewer SPICE
1RP9 A 344 - 404 Jmol AstexViewer SPICE
1RPK A 344 - 404 Jmol AstexViewer SPICE
2QPS A 344 - 404 Jmol AstexViewer SPICE
2QPU A 344 - 404 Jmol AstexViewer SPICE
B 344 - 404 Jmol AstexViewer SPICE
C 344 - 404 Jmol AstexViewer SPICE
3BSG A 344 - 404 Jmol AstexViewer SPICE
3BSH A 344 - 404 Jmol AstexViewer SPICE
Alpha-amylase 42 - 350 1HT6 A 18 - 326 Jmol AstexViewer SPICE
1P6W A 18 - 326 Jmol AstexViewer SPICE
1RP8 A 18 - 326 Jmol AstexViewer SPICE
1RP9 A 18 - 326 Jmol AstexViewer SPICE
1RPK A 18 - 326 Jmol AstexViewer SPICE
2QPS A 18 - 326 Jmol AstexViewer SPICE
2QPU A 18 - 326 Jmol AstexViewer SPICE
B 18 - 326 Jmol AstexViewer SPICE
C 18 - 326 Jmol AstexViewer SPICE
3BSG A 18 - 326 Jmol AstexViewer SPICE
3BSH A 18 - 326 Jmol AstexViewer SPICE