Summary
This is the summary of UniProt entry ARAF_ECOLI (P02924).
| Description: | L-arabinose-binding periplasmic protein |
| Source organism: |
Escherichia coli (strain K12)
(NCBI taxonomy ID
83333)
View Pfam proteome data. |
| Length: | 329 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| sig_p | n/a | 1 | 23 |
| Pfam A | Peripla_BP_1 | 25 | 320 |
| disorder | n/a | 147 | 148 |
| disorder | n/a | 174 | 175 |
| disorder | n/a | 179 | 180 |
| low_complexity | n/a | 318 | 329 |
| disorder | n/a | 328 | 329 |
Show or hide domain scores.
Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
Note: it can take a few seconds for this image to be generated and loaded.
Show sources update panel.
Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession P02924. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MHKFTKALAA IGLAAVMSQS AMAENLKLGF LVKQPEEPWF QTEWKFADKA
50 51
GKDLGFEVIK IAVPDGEKTL NAIDSLAASG AKGFVICTPD PKLGSAIVAK
100 101
ARGYDMKVIA VDDQFVNAKG KPMDTVPLVM MAATKIGERQ GQELYKEMQK
150 151
RGWDVKESAV MAITANELDT ARRRTTGSMD ALKAAGFPEK QIYQVPTKSN
200 201
DIPGAFDAAN SMLVQHPEVK HWLIVGMNDS TVLGGVRATE GQGFKAADII
250 251
GIGINGVDAV SELSKAQATG FYGSLLPSPD VHGYKSSEML YNWVAKDVEP
300 301
PKFTEVTDVV LITRDNFKEE LEKKGLGGK
329
Show the unformatted sequence. |
| Checksums: |
CRC64:A79D167EA92B0C64
MD5:a364105b35b80beaabd67a384340fbc1
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.
| Pfam family | UniProt residues | PDB ID | PDB chain ID | PDB residues | View |
|---|---|---|---|---|---|
| Peripla_BP_1 | 25 - 318 | 2WRZ | B | 2 - 295 | Jmol AstexViewer SPICE |
| 25 - 320 | 1ABE | A | 2 - 297 | Jmol AstexViewer SPICE | |
| 1ABF | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 1APB | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 1BAP | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 2WRZ | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 5ABP | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 6ABP | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 7ABP | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 8ABP | A | 2 - 297 | Jmol AstexViewer SPICE | ||
| 9ABP | A | 2 - 297 | Jmol AstexViewer SPICE |