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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: GP42_EBVB9 (P03205)

Summary

This is the summary of UniProt entry GP42_EBVB9 (P03205).

Description: Glycoprotein 42
Source organism: Epstein-Barr virus (strain B95-8) (HHV-4) (Human herpesvirus 4) (NCBI taxonomy ID 10377)
View Pfam proteome data.
Length: 223 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam B Pfam-B_54765 1 109
transmembrane n/a 7 27
low_complexity n/a 14 24
low_complexity n/a 30 41
low_complexity n/a 48 61
Pfam A Lectin_C 121 218

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P03205. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MVSFKQVRVP LFTAIALVIV LLLAYFLPPR VRGGGRVAAA AITWVPKPNV
50
51
EVWPVDPPPP VNFNKTAEQE YGDKEVKLPH WTPTLHTFQV PQNYTKANCT
100
101
YCNTREYTFS YKGCCFYFTK KKHTWNGCFQ ACAELYPCTY FYGPTPDILP
150
151
VVTRNLNAIE SLWVGVYRVG EGNWTSLDGG TFKVYQIFGS HCTYVSKFST
200
201
VPVSHHECSF LKPCLCVSQR SNS                             
223
 

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Checksums:
CRC64:F87541F6CEC26D74
MD5:434db2f2d32326e7dc90fc49c0259896

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Lectin_C 121 - 218 1KG0 C 121 - 218 Jmol AstexViewer SPICE
3FD4 A 121 - 218 Jmol AstexViewer SPICE
B 121 - 218 Jmol AstexViewer SPICE