Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: AMY2_HORVU (P04063)

Summary

This is the summary of UniProt entry AMY2_HORVU (P04063).

Description: Alpha-amylase type B isozyme EC=3.2.1.1
Source organism: Hordeum vulgare (Barley) (NCBI taxonomy ID 4513)
Length: 427 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 24
low_complexity n/a 6 27
Pfam A Alpha-amylase 41 348
disorder n/a 151 155
disorder n/a 157 166
disorder n/a 240 241
disorder n/a 246 247
disorder n/a 254 255
Pfam A Alpha-amyl_C2 366 426

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P04063. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MANKHLSLSL FLVLLGLSAS LASGQVLFQG FNWESWKHNG GWYNFLMGKV
50
51
DDIAAAGITH VWLPPASQSV AEQGYMPGRL YDLDASKYGN KAQLKSLIGA
100
101
LHGKGVKAIA DIVINHRTAE HKDGRGIYCI FEGGTPDARL DWGPHMICRD
150
151
DRPYADGTGN PDTGADFGAA PDIDHLNLRV QKELVEWLNW LKADIGFDGW
200
201
RFDFAKGYSA DVAKIYIDRS EPSFAVAEIW TSLAYGGDGK PNLNQDQHRQ
250
251
ELVNWVDKVG GKGPATTFDF TTKGILNVAV EGELWRLRGT DGKAPGMIGW
300
301
WPAKAVTFVD NHDTGSTQHM WPFPSDRVMQ GYAYILTHPG TPCIFYDHFF
350
351
DWGLKEEIDR LVSVRTRHGI HNESKLQIIE ADADLYLAEI DGKVIVKLGP
400
401
RYDVGNLIPG GFKVAAHGND YAVWEKI                         
427
 

Show the unformatted sequence.

Checksums:
CRC64:957C0B16621BF748
MD5:4dd8031aaf4b18c28e8fd39e3e809712

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Alpha-amyl_C2 366 - 426 1AMY A 342 - 402 Jmol AstexViewer SPICE
1AVA A 342 - 402 Jmol AstexViewer SPICE
B 342 - 402 Jmol AstexViewer SPICE
1BG9 A 342 - 402 Jmol AstexViewer SPICE
Alpha-amylase 41 - 348 1AMY A 17 - 324 Jmol AstexViewer SPICE
1AVA A 17 - 324 Jmol AstexViewer SPICE
B 17 - 324 Jmol AstexViewer SPICE
1BG9 A 17 - 324 Jmol AstexViewer SPICE