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6  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RL25_YEAST (P04456)

Summary

This is the summary of UniProt entry RL25_YEAST (P04456).

Description: 60S ribosomal protein L25
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 142 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Ribosomal_L23eN 1 54
low_complexity n/a 5 23
Pfam A Ribosomal_L23 60 139

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P04456. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAPSAKATAA KKAVVKGTNG KKALKVRTSA TFRLPKTLKL ARAPKYASKA
50
51
VPHYNRLDSY KVIEQPITSE TAMKKVEDGN ILVFQVSMKA NKYQIKKAVK
100
101
ELYEVDVLKV NTLVRPNGTK KAYVRLTADY DALDIANRIG YI        
142
 

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Checksums:
CRC64:E40ED3A4FB8CA9F5
MD5:9525e0e68f9f7fd22ef7d95f8da889cc

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ribosomal_L23 60 - 136 1S1I T 59 - 135 Jmol AstexViewer SPICE
60 - 139 2WW9 K 60 - 139 Jmol AstexViewer SPICE
2WWA K 60 - 139 Jmol AstexViewer SPICE
3IZS X 60 - 139 Jmol AstexViewer SPICE
3O58 W 60 - 139 Jmol AstexViewer SPICE
3O5H W 60 - 139 Jmol AstexViewer SPICE
Ribosomal_L23eN 21 - 54 3IZS X 21 - 54 Jmol AstexViewer SPICE
46 - 54 3O58 W 46 - 54 Jmol AstexViewer SPICE
3O5H W 46 - 54 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.