Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
6  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RS13_YEAST (P05756)

Summary

This is the summary of UniProt entry RS13_YEAST (P05756).

Description: 40S ribosomal protein S13
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 151 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Ribosomal_S13_N 1 60
Pfam A Ribosomal_S15 65 151

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P05756. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MGRMHSAGKG ISSSAIPYSR NAPAWFKLSS ESVIEQIVKY ARKGLTPSQI
50
51
GVLLRDAHGV TQARVITGNK IMRILKSNGL APEIPEDLYY LIKKAVSVRK
100
101
HLERNRKDKD AKFRLILIES RIHRLARYYR TVAVLPPNWK YESATASALV
150
151
N                                                     
151
 

Show the unformatted sequence.

Checksums:
CRC64:9AA9EFBEC837053D
MD5:19e5cba9470a5149bfffbb25df2f8f87

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ribosomal_S13_N 2 - 60 3U5C N 2 - 60 Jmol AstexViewer SPICE
3U5G N 2 - 60 Jmol AstexViewer SPICE
31 - 60 3IZB O 31 - 60 Jmol AstexViewer SPICE
35 - 60 3O2Z G 35 - 60 Jmol AstexViewer SPICE
3O30 G 35 - 60 Jmol AstexViewer SPICE
Ribosomal_S15 65 - 151 3IZB O 65 - 151 Jmol AstexViewer SPICE
3O2Z G 65 - 151 Jmol AstexViewer SPICE
3O30 G 65 - 151 Jmol AstexViewer SPICE
3U5C N 65 - 151 Jmol AstexViewer SPICE
3U5G N 65 - 151 Jmol AstexViewer SPICE
66 - 130 1S1H O 65 - 129 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.