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3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: DDLB_ECOLI (P07862)

Summary

This is the summary of UniProt entry DDLB_ECOLI (P07862).

Description: D-alanine--D-alanine ligase B EC=6.3.2.4
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 306 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Dala_Dala_lig_N 3 54
Pfam A Dala_Dala_lig_N 43 86
Pfam A Dala_Dala_lig_C 103 303

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P07862. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MTDKIAVLLG GTSAEREVSL NSGAAVLAGL REGGIDAYPV DPKEVDVTQL
50
51
KSMGFQKVFI ALHGRGGEDG TLQGMLELMG LPYTGSGVMA SALSMDKLRS
100
101
KLLWQGAGLP VAPWVALTRA EFEKGLSDKQ LAEISALGLP VIVKPSREGS
150
151
SVGMSKVVAE NALQDALRLA FQHDEEVLIE KWLSGPEFTV AILGEEILPS
200
201
IRIQPSGTFY DYEAKYLSDE TQYFCPAGLE ASQEANLQAL VLKAWTTLGC
250
251
KGWGRIDVML DSDGQFYLLE ANTSPGMTSH SLVPMAARQA GMSFSQLVVR
300
301
ILELAD                                                
306
 

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Checksums:
CRC64:F2D401C323A04471
MD5:54e611311e0e2a239edc3e7c5749607a

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Dala_Dala_lig_C 103 - 303 1IOV A 103 - 303 Jmol AstexViewer SPICE
1IOW A 103 - 303 Jmol AstexViewer SPICE
2DLN A 103 - 303 Jmol AstexViewer SPICE
Dala_Dala_lig_N 3 - 54 1IOV A 3 - 54 Jmol AstexViewer SPICE
1IOW A 3 - 54 Jmol AstexViewer SPICE
2DLN A 3 - 54 Jmol AstexViewer SPICE
43 - 86 1IOV A 43 - 86 Jmol AstexViewer SPICE
1IOW A 43 - 86 Jmol AstexViewer SPICE
2DLN A 43 - 86 Jmol AstexViewer SPICE