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4  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: COX2_PARDE (P08306)

Summary

This is the summary of UniProt entry COX2_PARDE (P08306).

Description: Cytochrome c oxidase subunit 2 EC=1.9.3.1
Source organism: Paracoccus denitrificans (NCBI taxonomy ID 266)
Length: 298 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 29
Pfam A COX2_TM 41 128
transmembrane n/a 66 87
low_complexity n/a 78 87
transmembrane n/a 108 130
Pfam A COX2 141 263
low_complexity n/a 190 203

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P08306. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MMAIATKRRG VAAVMSLGVA TMTAVPALAQ DVLGDLPVIG KPVNGGMNFQ
50
51
PASSPLAHDQ QWLDHFVLYI ITAVTIFVCL LLLICIVRFN RRANPVPARF
100
101
THNTPIEVIW TLVPVLILVA IGAFSLPILF RSQEMPNDPD LVIKAIGHQW
150
151
YWSYEYPNDG VAFDALMLEK EALADAGYSE DEYLLATDNP VVVPVGKKVL
200
201
VQVTATDVIH AWTIPAFAVK QDAVPGRIAQ LWFSVDQEGV YFGQCSELCG
250
251
INHAYMPIVV KAVSQEKYEA WLAGAKEEFA ADASDYLPAS PVKLASAE  
298
 

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Checksums:
CRC64:918A64A9E3B93366
MD5:057acb6c652d843a692737afe44f1f54

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
COX2 141 - 263 1AR1 B 112 - 234 Jmol AstexViewer SPICE
1QLE B 112 - 234 Jmol AstexViewer SPICE
3EHB B 112 - 234 Jmol AstexViewer SPICE
3HB3 B 112 - 234 Jmol AstexViewer SPICE
COX2_TM 41 - 128 1AR1 B 12 - 99 Jmol AstexViewer SPICE
1QLE B 12 - 99 Jmol AstexViewer SPICE
3EHB B 12 - 99 Jmol AstexViewer SPICE
3HB3 B 12 - 99 Jmol AstexViewer SPICE