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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: SECY_ECOLI (P0AGA2)

Summary

This is the summary of UniProt entry SECY_ECOLI (P0AGA2).

Description: Protein translocase subunit SecY
Source organism: Escherichia coli (strain K12) (NCBI taxonomy ID 83333)
View Pfam proteome data.
Length: 443 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
low_complexity n/a 13 24
transmembrane n/a 23 44
transmembrane n/a 75 98
Pfam A SecY 76 418
transmembrane n/a 119 139
transmembrane n/a 154 174
transmembrane n/a 186 203
transmembrane n/a 215 237
low_complexity n/a 217 237
transmembrane n/a 274 296
transmembrane n/a 316 337
transmembrane n/a 373 391
transmembrane n/a 397 418

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P0AGA2. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAKQPGLDFQ SAKGGLGELK RRLLFVIGAL IVFRIGSFIP IPGIDAAVLA
50
51
KLLEQQRGTI IEMFNMFSGG ALSRASIFAL GIMPYISASI IIQLLTVVHP
100
101
TLAEIKKEGE SGRRKISQYT RYGTLVLAIF QSIGIATGLP NMPGMQGLVI
150
151
NPGFAFYFTA VVSLVTGTMF LMWLGEQITE RGIGNGISII IFAGIVAGLP
200
201
PAIAHTIEQA RQGDLHFLVL LLVAVLVFAV TFFVVFVERG QRRIVVNYAK
250
251
RQQGRRVYAA QSTHLPLKVN MAGVIPAIFA SSIILFPATI ASWFGGGTGW
300
301
NWLTTISLYL QPGQPLYVLL YASAIIFFCF FYTALVFNPR ETADNLKKSG
350
351
AFVPGIRPGE QTAKYIDKVM TRLTLVGALY ITFICLIPEF MRDAMKVPFY
400
401
FGGTSLLIVV VVIMDFMAQV QTLMMSSQYE SALKKANLKG YGR       
443
 

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Checksums:
CRC64:711CA63CD8809763
MD5:4cd214bd2268cc5ab7f4398b9cbc6ce0

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
SecY 76 - 418 3J01 A 76 - 418 Jmol AstexViewer SPICE