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4  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RL11A_YEAST (P0C0W9)

Summary

This is the summary of UniProt entry RL11A_YEAST (P0C0W9).

Description: 60S ribosomal protein L11-A
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 174 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
disorder n/a 1 2
disorder n/a 4 5
Pfam A Ribosomal_L5 7 60
Pfam A Ribosomal_L5_C 64 163
disorder n/a 140 151

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P0C0W9. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSAKAQNPMR DLKIEKLVLN ISVGESGDRL TRASKVLEQL SGQTPVQSKA
50
51
RYTVRTFGIR RNEKIAVHVT VRGPKAEEIL ERGLKVKEYQ LRDRNFSATG
100
101
NFGFGIDEHI DLGIKYDPSI GIFGMDFYVV MNRPGARVTR RKRCKGTVGN
150
151
SHKTTKEDTV SWFKQKYDAD VLDK                            
174
 

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Checksums:
CRC64:1E5C7D83541C6854
MD5:f899a986bd089054c88999f2b58599c7

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ribosomal_L5 7 - 60 1S1I J 6 - 59 Jmol AstexViewer SPICE
3IZS E 7 - 60 Jmol AstexViewer SPICE
3O58 K 7 - 60 Jmol AstexViewer SPICE
3O5H K 7 - 60 Jmol AstexViewer SPICE
Ribosomal_L5_C 64 - 163 1S1I J 63 - 162 Jmol AstexViewer SPICE
3IZS E 64 - 163 Jmol AstexViewer SPICE
3O58 K 64 - 163 Jmol AstexViewer SPICE
3O5H K 64 - 163 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.