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6  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: AMYA1_ASPOR (P0C1B3)

Summary

This is the summary of UniProt entry AMYA1_ASPOR (P0C1B3).

Description: Alpha-amylase A type-1/2 EC=3.2.1.1
Source organism: Aspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold) (NCBI taxonomy ID 510516)
View Pfam proteome data.
Length: 499 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 21
low_complexity n/a 16 25
Pfam A Alpha-amylase 61 362
disorder n/a 367 368
Pfam A DUF1966 407 496

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P0C1B3. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MMVAWWSLFL YGLQVAAPAL AATPADWRSQ SIYFLLTDRF ARTDGSTTAT
50
51
CNTADQKYCG GTWQGIIDKL DYIQGMGFTA IWITPVTAQL PQTTAYGDAY
100
101
HGYWQQDIYS LNENYGTADD LKALSSALHE RGMYLMVDVV ANHMGYDGAG
150
151
SSVDYSVFKP FSSQDYFHPF CFIQNYEDQT QVEDCWLGDN TVSLPDLDTT
200
201
KDVVKNEWYD WVGSLVSNYS IDGLRIDTVK HVQKDFWPGY NKAAGVYCIG
250
251
EVLDGDPAYT CPYQNVMDGV LNYPIYYPLL NAFKSTSGSM DDLYNMINTV
300
301
KSDCPDSTLL GTFVENHDNP RFASYTNDIA LAKNVAAFII LNDGIPIIYA
350
351
GQEQHYAGGN DPANREATWL SGYPTDSELY KLIASANAIR NYAISKDTGF
400
401
VTYKNWPIYK DDTTIAMRKG TDGSQIVTIL SNKGASGDSY TLSLSGAGYT
450
451
AGQQLTEVIG CTTVTVGSDG NVPVPMAGGL PRVLYPTEKL AGSKICSSS 
499
 

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Checksums:
CRC64:E407AE50DD071B52
MD5:68bb7f77871eff1e23e32ef4711de7e2

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Alpha-amylase 61 - 362 2GUY A 40 - 341 Jmol AstexViewer SPICE
2GVY A 40 - 341 Jmol AstexViewer SPICE
B 40 - 341 Jmol AstexViewer SPICE
2TAA A 40 - 341 Jmol AstexViewer SPICE
B 40 - 341 Jmol AstexViewer SPICE
C 40 - 341 Jmol AstexViewer SPICE
3KWX A 40 - 341 Jmol AstexViewer SPICE
6TAA A 40 - 341 Jmol AstexViewer SPICE
7TAA A 40 - 341 Jmol AstexViewer SPICE
DUF1966 407 - 496 2GUY A 386 - 475 Jmol AstexViewer SPICE
2GVY A 386 - 475 Jmol AstexViewer SPICE
B 386 - 475 Jmol AstexViewer SPICE
2TAA A 385 - 474 Jmol AstexViewer SPICE
B 385 - 474 Jmol AstexViewer SPICE
C 385 - 474 Jmol AstexViewer SPICE
3KWX A 386 - 475 Jmol AstexViewer SPICE
6TAA A 386 - 475 Jmol AstexViewer SPICE
7TAA A 386 - 475 Jmol AstexViewer SPICE