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86  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPB3_YEAST (P16370)

Summary

This is the summary of UniProt entry RPB3_YEAST (P16370).

Description: DNA-directed RNA polymerase II subunit RPB3
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 318 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
disorder n/a 1 8
Pfam A RNA_pol_L 18 256
Pfam A RNA_pol_A_bac 49 171
disorder n/a 202 218
disorder n/a 270 309
disorder n/a 311 315

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P16370. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSEEGPQVKI REASKDNVDF ILSNVDLAMA NSLRRVMIAE IPTLAIDSVE
50
51
VETNTTVLAD EFIAHRLGLI PLQSMDIEQL EYSRDCFCED HCDKCSVVLT
100
101
LQAFGESEST TNVYSKDLVI VSNLMGRNIG HPIIQDKEGN GVLICKLRKG
150
151
QELKLTCVAK KGIAKEHAKW GPAAAIEFEY DPWNKLKHTD YWYEQDSAKE
200
201
WPQSKNCEYE DPPNEGDPFD YKAQADTFYM NVESVGSIPV DQVVVRGIDT
250
251
LQKKVASILL ALTQMDQDKV NFASGDNNTA SNMLGSNEDV MMTGAEQDPY
300
301
SNASQMGNTG SGGYDNAW                                   
318
 

Show the unformatted sequence.

Checksums:
CRC64:8E1D1E6BB7B51D89
MD5:34ea93e780bac1f34d99f722b6bb21d6

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_A_bac 49 - 171 1I3Q C 49 - 171 Jmol AstexViewer SPICE
1I50 C 49 - 171 Jmol AstexViewer SPICE
1I6H C 49 - 171 Jmol AstexViewer SPICE
1K83 C 49 - 171 Jmol AstexViewer SPICE
1NIK C 49 - 171 Jmol AstexViewer SPICE
1R5U C 49 - 171 Jmol AstexViewer SPICE
1R9S C 49 - 171 Jmol AstexViewer SPICE
1R9T C 49 - 171 Jmol AstexViewer SPICE
1SFO C 49 - 171 Jmol AstexViewer SPICE
1TWA C 49 - 171 Jmol AstexViewer SPICE
1TWC C 49 - 171 Jmol AstexViewer SPICE
1TWF C 49 - 171 Jmol AstexViewer SPICE
1TWG C 49 - 171 Jmol AstexViewer SPICE
1TWH C 49 - 171 Jmol AstexViewer SPICE
1WCM C 49 - 171 Jmol AstexViewer SPICE
1Y1V C 49 - 171 Jmol AstexViewer SPICE
1Y1W C 49 - 171 Jmol AstexViewer SPICE
1Y77 C 49 - 171 Jmol AstexViewer SPICE
2B63 C 49 - 171 Jmol AstexViewer SPICE
2B8K C 49 - 171 Jmol AstexViewer SPICE
2E2H C 49 - 171 Jmol AstexViewer SPICE
2E2I C 49 - 171 Jmol AstexViewer SPICE
2E2J C 49 - 171 Jmol AstexViewer SPICE
2JA5 C 49 - 171 Jmol AstexViewer SPICE
2JA6 C 49 - 171 Jmol AstexViewer SPICE
2JA7 C 49 - 171 Jmol AstexViewer SPICE
O 49 - 171 Jmol AstexViewer SPICE
2JA8 C 49 - 171 Jmol AstexViewer SPICE
2NVQ C 49 - 171 Jmol AstexViewer SPICE
2NVT C 49 - 171 Jmol AstexViewer SPICE
2NVX C 49 - 171 Jmol AstexViewer SPICE
2NVY C 49 - 171 Jmol AstexViewer SPICE
2NVZ C 49 - 171 Jmol AstexViewer SPICE
2R7Z C 49 - 171 Jmol AstexViewer SPICE
2R92 C 49 - 171 Jmol AstexViewer SPICE
2R93 C 49 - 171 Jmol AstexViewer SPICE
2VUM C 49 - 171 Jmol AstexViewer SPICE
2YU9 C 49 - 171 Jmol AstexViewer SPICE
3CQZ C 49 - 171 Jmol AstexViewer SPICE
3FKI C 49 - 171 Jmol AstexViewer SPICE
3GTG C 49 - 171 Jmol AstexViewer SPICE
3GTJ C 49 - 171 Jmol AstexViewer SPICE
3GTK C 49 - 171 Jmol AstexViewer SPICE
3GTL C 49 - 171 Jmol AstexViewer SPICE
3GTM C 49 - 171 Jmol AstexViewer SPICE
3GTO C 49 - 171 Jmol AstexViewer SPICE
3GTP C 49 - 171 Jmol AstexViewer SPICE
3GTQ C 49 - 171 Jmol AstexViewer SPICE
3H3V D 49 - 171 Jmol AstexViewer SPICE
3HOU C 49 - 171 Jmol AstexViewer SPICE
O 49 - 171 Jmol AstexViewer SPICE
3HOV C 49 - 171 Jmol AstexViewer SPICE
3HOW C 49 - 171 Jmol AstexViewer SPICE
3HOX C 49 - 171 Jmol AstexViewer SPICE
3HOY C 49 - 171 Jmol AstexViewer SPICE
3HOZ C 49 - 171 Jmol AstexViewer SPICE
3I4M C 49 - 171 Jmol AstexViewer SPICE
3I4N C 49 - 171 Jmol AstexViewer SPICE
3K1F C 49 - 171 Jmol AstexViewer SPICE
3K7A C 49 - 171 Jmol AstexViewer SPICE
3M3Y C 49 - 171 Jmol AstexViewer SPICE
3M4O C 49 - 171 Jmol AstexViewer SPICE
3PO2 C 49 - 171 Jmol AstexViewer SPICE
3PO3 C 49 - 171 Jmol AstexViewer SPICE
3QT1 C 49 - 171 Jmol AstexViewer SPICE
3RZD C 49 - 171 Jmol AstexViewer SPICE
3S14 C 49 - 171 Jmol AstexViewer SPICE
3S15 C 49 - 171 Jmol AstexViewer SPICE
3S16 C 49 - 171 Jmol AstexViewer SPICE
3S17 C 49 - 171 Jmol AstexViewer SPICE
3S1M C 49 - 171 Jmol AstexViewer SPICE
3S1N C 49 - 171 Jmol AstexViewer SPICE
3S1Q C 49 - 171 Jmol AstexViewer SPICE
3S1R C 49 - 171 Jmol AstexViewer SPICE
3S2D C 49 - 171 Jmol AstexViewer SPICE
3S2H C 49 - 171 Jmol AstexViewer SPICE
4A3B C 49 - 171 Jmol AstexViewer SPICE
4A3C C 49 - 171 Jmol AstexViewer SPICE
4A3D C 49 - 171 Jmol AstexViewer SPICE
4A3E C 49 - 171 Jmol AstexViewer SPICE
4A3F C 49 - 171 Jmol AstexViewer SPICE
4A3G C 49 - 171 Jmol AstexViewer SPICE
4A3I C 49 - 171 Jmol AstexViewer SPICE
4A3J C 49 - 171 Jmol AstexViewer SPICE
4A3K C 49 - 171 Jmol AstexViewer SPICE
4A3L C 49 - 171 Jmol AstexViewer SPICE
4A3M C 49 - 171 Jmol AstexViewer SPICE
4A93 C 49 - 171 Jmol AstexViewer SPICE
RNA_pol_L 18 - 256 1I3Q C 18 - 256 Jmol AstexViewer SPICE
1I50 C 18 - 256 Jmol AstexViewer SPICE
1I6H C 18 - 256 Jmol AstexViewer SPICE
1K83 C 18 - 256 Jmol AstexViewer SPICE
1NIK C 18 - 256 Jmol AstexViewer SPICE
1R5U C 18 - 256 Jmol AstexViewer SPICE
1R9S C 18 - 256 Jmol AstexViewer SPICE
1R9T C 18 - 256 Jmol AstexViewer SPICE
1SFO C 18 - 256 Jmol AstexViewer SPICE
1TWA C 18 - 256 Jmol AstexViewer SPICE
1TWC C 18 - 256 Jmol AstexViewer SPICE
1TWF C 18 - 256 Jmol AstexViewer SPICE
1TWG C 18 - 256 Jmol AstexViewer SPICE
1TWH C 18 - 256 Jmol AstexViewer SPICE
1WCM C 18 - 256 Jmol AstexViewer SPICE
1Y1V C 18 - 256 Jmol AstexViewer SPICE
1Y1W C 18 - 256 Jmol AstexViewer SPICE
1Y77 C 18 - 256 Jmol AstexViewer SPICE
2B63 C 18 - 256 Jmol AstexViewer SPICE
2B8K C 18 - 256 Jmol AstexViewer SPICE
2E2H C 18 - 256 Jmol AstexViewer SPICE
2E2I C 18 - 256 Jmol AstexViewer SPICE
2E2J C 18 - 256 Jmol AstexViewer SPICE
2JA5 C 18 - 256 Jmol AstexViewer SPICE
2JA6 C 18 - 256 Jmol AstexViewer SPICE
2JA7 C 18 - 256 Jmol AstexViewer SPICE
O 18 - 256 Jmol AstexViewer SPICE
2JA8 C 18 - 256 Jmol AstexViewer SPICE
2NVQ C 18 - 256 Jmol AstexViewer SPICE
2NVT C 18 - 256 Jmol AstexViewer SPICE
2NVX C 18 - 256 Jmol AstexViewer SPICE
2NVY C 18 - 256 Jmol AstexViewer SPICE
2NVZ C 18 - 256 Jmol AstexViewer SPICE
2R7Z C 18 - 256 Jmol AstexViewer SPICE
2R92 C 18 - 256 Jmol AstexViewer SPICE
2R93 C 18 - 256 Jmol AstexViewer SPICE
2VUM C 18 - 256 Jmol AstexViewer SPICE
2YU9 C 18 - 256 Jmol AstexViewer SPICE
3CQZ C 18 - 256 Jmol AstexViewer SPICE
3FKI C 18 - 256 Jmol AstexViewer SPICE
3GTG C 18 - 256 Jmol AstexViewer SPICE
3GTJ C 18 - 256 Jmol AstexViewer SPICE
3GTK C 18 - 256 Jmol AstexViewer SPICE
3GTL C 18 - 256 Jmol AstexViewer SPICE
3GTM C 18 - 256 Jmol AstexViewer SPICE
3GTO C 18 - 256 Jmol AstexViewer SPICE
3GTP C 18 - 256 Jmol AstexViewer SPICE
3GTQ C 18 - 256 Jmol AstexViewer SPICE
3H3V D 18 - 256 Jmol AstexViewer SPICE
3HOU C 18 - 256 Jmol AstexViewer SPICE
O 18 - 256 Jmol AstexViewer SPICE
3HOV C 18 - 256 Jmol AstexViewer SPICE
3HOW C 18 - 256 Jmol AstexViewer SPICE
3HOX C 18 - 256 Jmol AstexViewer SPICE
3HOY C 18 - 256 Jmol AstexViewer SPICE
3HOZ C 18 - 256 Jmol AstexViewer SPICE
3I4M C 18 - 256 Jmol AstexViewer SPICE
3I4N C 18 - 256 Jmol AstexViewer SPICE
3K1F C 18 - 256 Jmol AstexViewer SPICE
3K7A C 18 - 256 Jmol AstexViewer SPICE
3M3Y C 18 - 256 Jmol AstexViewer SPICE
3M4O C 18 - 256 Jmol AstexViewer SPICE
3PO2 C 18 - 256 Jmol AstexViewer SPICE
3PO3 C 18 - 256 Jmol AstexViewer SPICE
3QT1 C 18 - 256 Jmol AstexViewer SPICE
3RZD C 18 - 256 Jmol AstexViewer SPICE
3S14 C 18 - 256 Jmol AstexViewer SPICE
3S15 C 18 - 256 Jmol AstexViewer SPICE
3S16 C 18 - 256 Jmol AstexViewer SPICE
3S17 C 18 - 256 Jmol AstexViewer SPICE
3S1M C 18 - 256 Jmol AstexViewer SPICE
3S1N C 18 - 256 Jmol AstexViewer SPICE
3S1Q C 18 - 256 Jmol AstexViewer SPICE
3S1R C 18 - 256 Jmol AstexViewer SPICE
3S2D C 18 - 256 Jmol AstexViewer SPICE
3S2H C 18 - 256 Jmol AstexViewer SPICE
4A3B C 18 - 256 Jmol AstexViewer SPICE
4A3C C 18 - 256 Jmol AstexViewer SPICE
4A3D C 18 - 256 Jmol AstexViewer SPICE
4A3E C 18 - 256 Jmol AstexViewer SPICE
4A3F C 18 - 256 Jmol AstexViewer SPICE
4A3G C 18 - 256 Jmol AstexViewer SPICE
4A3I C 18 - 256 Jmol AstexViewer SPICE
4A3J C 18 - 256 Jmol AstexViewer SPICE
4A3K C 18 - 256 Jmol AstexViewer SPICE
4A3L C 18 - 256 Jmol AstexViewer SPICE
4A3M C 18 - 256 Jmol AstexViewer SPICE
4A93 C 18 - 256 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.