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41  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPB4_YEAST (P20433)

Summary

This is the summary of UniProt entry RPB4_YEAST (P20433).

Description: DNA-directed RNA polymerase II subunit RPB4
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 221 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
disorder n/a 1 6
disorder n/a 8 23
low_complexity n/a 11 22
disorder n/a 26 36
disorder n/a 44 46
Pfam A RNA_pol_Rpb4 49 218
disorder n/a 74 118
low_complexity n/a 75 84
low_complexity n/a 88 112
disorder n/a 124 130
disorder n/a 134 135
disorder n/a 139 142
disorder n/a 195 198
coiled_coil n/a 200 220

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P20433. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MNVSTSTFQT RRRRLKKVEE EENAATLQLG QEFQLKQINH QGEEEELIAL
50
51
NLSEARLVIK EALVERRRAF KRSQKKHKKK HLKHENANDE TTAVEDEDDD
100
101
LDEDDVNADD DDFMHSETRE KELESIDVLL EQTTGGNNKD LKNTMQYLTN
150
151
FSRFRDQETV GAVIQLLKST GLHPFEVAQL GSLACDTADE AKTLIPSLNN
200
201
KISDDELERI LKELSNLETL Y                               
221
 

Show the unformatted sequence.

Checksums:
CRC64:72A8A26871B87775
MD5:3ce08bc812f5c0373879245a36743df3

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb4 49 - 218 1WCM D 49 - 218 Jmol AstexViewer SPICE
1Y14 A 49 - 218 Jmol AstexViewer SPICE
C 49 - 218 Jmol AstexViewer SPICE
1Y1V D 49 - 218 Jmol AstexViewer SPICE
1Y1W D 49 - 218 Jmol AstexViewer SPICE
1Y77 D 49 - 218 Jmol AstexViewer SPICE
2B63 D 49 - 218 Jmol AstexViewer SPICE
2B8K D 49 - 218 Jmol AstexViewer SPICE
2JA5 D 49 - 218 Jmol AstexViewer SPICE
2JA6 D 49 - 218 Jmol AstexViewer SPICE
2JA7 D 49 - 218 Jmol AstexViewer SPICE
P 49 - 218 Jmol AstexViewer SPICE
2JA8 D 49 - 218 Jmol AstexViewer SPICE
2R7Z D 49 - 218 Jmol AstexViewer SPICE
2R92 D 49 - 218 Jmol AstexViewer SPICE
2R93 D 49 - 218 Jmol AstexViewer SPICE
2VUM D 49 - 218 Jmol AstexViewer SPICE
3FKI D 49 - 218 Jmol AstexViewer SPICE
3H3V E 49 - 218 Jmol AstexViewer SPICE
3HOU D 49 - 218 Jmol AstexViewer SPICE
P 49 - 218 Jmol AstexViewer SPICE
3HOV D 49 - 218 Jmol AstexViewer SPICE
3HOW D 49 - 218 Jmol AstexViewer SPICE
3HOX D 49 - 218 Jmol AstexViewer SPICE
3HOY D 49 - 218 Jmol AstexViewer SPICE
3HOZ D 49 - 218 Jmol AstexViewer SPICE
3I4M D 49 - 218 Jmol AstexViewer SPICE
3I4N D 49 - 218 Jmol AstexViewer SPICE
3K1F D 49 - 218 Jmol AstexViewer SPICE
3PO2 D 49 - 218 Jmol AstexViewer SPICE
3PO3 D 49 - 218 Jmol AstexViewer SPICE
3QT1 D 49 - 218 Jmol AstexViewer SPICE
4A3B D 49 - 218 Jmol AstexViewer SPICE
4A3C D 49 - 218 Jmol AstexViewer SPICE
4A3D D 49 - 218 Jmol AstexViewer SPICE
4A3E D 49 - 218 Jmol AstexViewer SPICE
4A3F D 49 - 218 Jmol AstexViewer SPICE
4A3G D 49 - 218 Jmol AstexViewer SPICE
4A3I D 49 - 218 Jmol AstexViewer SPICE
4A3J D 49 - 218 Jmol AstexViewer SPICE
4A3K D 49 - 218 Jmol AstexViewer SPICE
4A3L D 49 - 218 Jmol AstexViewer SPICE
4A3M D 49 - 218 Jmol AstexViewer SPICE
4A93 D 49 - 218 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.