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87  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPAB1_YEAST (P20434)

Summary

This is the summary of UniProt entry RPAB1_YEAST (P20434).

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC1
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 215 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_Rpb5_N 1 101
disorder n/a 56 63
Pfam A RNA_pol_Rpb5_C 142 215

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P20434. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MDQENERNIS RLWRAFRTVK EMVKDRGYFI TQEEVELPLE DFKAKYCDSM
50
51
GRPQRKMMSF QANPTEESIS KFPDMGSLWV EFCDEPSVGV KTMKTFVIHI
100
101
QEKNFQTGIF VYQNNITPSA MKLVPSIPPA TIETFNEAAL VVNITHHELV
150
151
PKHIRLSSDE KRELLKRYRL KESQLPRIQR ADPVALYLGL KRGEVVKIIR
200
201
KSETSGRYAS YRICM                                      
215
 

Show the unformatted sequence.

Checksums:
CRC64:2A15F7114D69D829
MD5:93c158a5afce1e4333573d5b2e77ac51

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb5_C 142 - 215 1DZF A 142 - 215 Jmol AstexViewer SPICE
1I3Q E 142 - 215 Jmol AstexViewer SPICE
1I50 E 142 - 215 Jmol AstexViewer SPICE
1I6H E 142 - 215 Jmol AstexViewer SPICE
1K83 E 142 - 215 Jmol AstexViewer SPICE
1NIK E 142 - 215 Jmol AstexViewer SPICE
1R5U E 142 - 215 Jmol AstexViewer SPICE
1R9S E 142 - 215 Jmol AstexViewer SPICE
1R9T E 142 - 215 Jmol AstexViewer SPICE
1SFO E 142 - 215 Jmol AstexViewer SPICE
1TWA E 142 - 215 Jmol AstexViewer SPICE
1TWC E 142 - 215 Jmol AstexViewer SPICE
1TWF E 142 - 215 Jmol AstexViewer SPICE
1TWG E 142 - 215 Jmol AstexViewer SPICE
1TWH E 142 - 215 Jmol AstexViewer SPICE
1WCM E 142 - 215 Jmol AstexViewer SPICE
1Y1V E 142 - 215 Jmol AstexViewer SPICE
1Y1W E 142 - 215 Jmol AstexViewer SPICE
1Y77 E 142 - 215 Jmol AstexViewer SPICE
2B63 E 142 - 215 Jmol AstexViewer SPICE
2B8K E 142 - 215 Jmol AstexViewer SPICE
2E2H E 142 - 215 Jmol AstexViewer SPICE
2E2I E 142 - 215 Jmol AstexViewer SPICE
2E2J E 142 - 215 Jmol AstexViewer SPICE
2JA5 E 142 - 215 Jmol AstexViewer SPICE
2JA6 E 142 - 215 Jmol AstexViewer SPICE
2JA7 E 142 - 215 Jmol AstexViewer SPICE
Q 142 - 215 Jmol AstexViewer SPICE
2JA8 E 142 - 215 Jmol AstexViewer SPICE
2NVQ E 142 - 215 Jmol AstexViewer SPICE
2NVT E 142 - 215 Jmol AstexViewer SPICE
2NVX E 142 - 215 Jmol AstexViewer SPICE
2NVY E 142 - 215 Jmol AstexViewer SPICE
2NVZ E 142 - 215 Jmol AstexViewer SPICE
2R7Z E 142 - 215 Jmol AstexViewer SPICE
2R92 E 142 - 215 Jmol AstexViewer SPICE
2R93 E 142 - 215 Jmol AstexViewer SPICE
2VUM E 142 - 215 Jmol AstexViewer SPICE
2YU9 E 142 - 215 Jmol AstexViewer SPICE
3CQZ E 142 - 215 Jmol AstexViewer SPICE
3FKI E 142 - 215 Jmol AstexViewer SPICE
3GTG E 142 - 215 Jmol AstexViewer SPICE
3GTJ E 142 - 215 Jmol AstexViewer SPICE
3GTK E 142 - 215 Jmol AstexViewer SPICE
3GTL E 142 - 215 Jmol AstexViewer SPICE
3GTM E 142 - 215 Jmol AstexViewer SPICE
3GTO E 142 - 215 Jmol AstexViewer SPICE
3GTP E 142 - 215 Jmol AstexViewer SPICE
3GTQ E 142 - 215 Jmol AstexViewer SPICE
3H3V F 142 - 215 Jmol AstexViewer SPICE
3HOU E 142 - 215 Jmol AstexViewer SPICE
Q 142 - 215 Jmol AstexViewer SPICE
3HOV E 142 - 215 Jmol AstexViewer SPICE
3HOW E 142 - 215 Jmol AstexViewer SPICE
3HOX E 142 - 215 Jmol AstexViewer SPICE
3HOY E 142 - 215 Jmol AstexViewer SPICE
3HOZ E 142 - 215 Jmol AstexViewer SPICE
3I4M E 142 - 215 Jmol AstexViewer SPICE
3I4N E 142 - 215 Jmol AstexViewer SPICE
3K1F E 142 - 215 Jmol AstexViewer SPICE
3K7A E 142 - 215 Jmol AstexViewer SPICE
3M3Y E 142 - 215 Jmol AstexViewer SPICE
3M4O E 142 - 215 Jmol AstexViewer SPICE
3PO2 E 142 - 215 Jmol AstexViewer SPICE
3PO3 E 142 - 215 Jmol AstexViewer SPICE
3QT1 E 142 - 215 Jmol AstexViewer SPICE
3RZD E 142 - 215 Jmol AstexViewer SPICE
3S14 E 142 - 215 Jmol AstexViewer SPICE
3S15 E 142 - 215 Jmol AstexViewer SPICE
3S16 E 142 - 215 Jmol AstexViewer SPICE
3S17 E 142 - 215 Jmol AstexViewer SPICE
3S1M E 142 - 215 Jmol AstexViewer SPICE
3S1N E 142 - 215 Jmol AstexViewer SPICE
3S1Q E 142 - 215 Jmol AstexViewer SPICE
3S1R E 142 - 215 Jmol AstexViewer SPICE
3S2D E 142 - 215 Jmol AstexViewer SPICE
3S2H E 142 - 215 Jmol AstexViewer SPICE
4A3B E 142 - 215 Jmol AstexViewer SPICE
4A3C E 142 - 215 Jmol AstexViewer SPICE
4A3D E 142 - 215 Jmol AstexViewer SPICE
4A3E E 142 - 215 Jmol AstexViewer SPICE
4A3F E 142 - 215 Jmol AstexViewer SPICE
4A3G E 142 - 215 Jmol AstexViewer SPICE
4A3I E 142 - 215 Jmol AstexViewer SPICE
4A3J E 142 - 215 Jmol AstexViewer SPICE
4A3K E 142 - 215 Jmol AstexViewer SPICE
4A3L E 142 - 215 Jmol AstexViewer SPICE
4A3M E 142 - 215 Jmol AstexViewer SPICE
4A93 E 142 - 215 Jmol AstexViewer SPICE
RNA_pol_Rpb5_N 1 - 101 1I3Q E 1 - 101 Jmol AstexViewer SPICE
1I50 E 1 - 101 Jmol AstexViewer SPICE
1TWA E 1 - 101 Jmol AstexViewer SPICE
1TWC E 1 - 101 Jmol AstexViewer SPICE
1TWF E 1 - 101 Jmol AstexViewer SPICE
1TWG E 1 - 101 Jmol AstexViewer SPICE
1TWH E 1 - 101 Jmol AstexViewer SPICE
2NVY E 1 - 101 Jmol AstexViewer SPICE
3GTG E 1 - 101 Jmol AstexViewer SPICE
3GTJ E 1 - 101 Jmol AstexViewer SPICE
3GTK E 1 - 101 Jmol AstexViewer SPICE
2 - 101 1I6H E 2 - 101 Jmol AstexViewer SPICE
1NIK E 2 - 101 Jmol AstexViewer SPICE
1R5U E 2 - 101 Jmol AstexViewer SPICE
1R9S E 2 - 101 Jmol AstexViewer SPICE
1R9T E 2 - 101 Jmol AstexViewer SPICE
1SFO E 2 - 101 Jmol AstexViewer SPICE
1WCM E 2 - 101 Jmol AstexViewer SPICE
1Y1V E 2 - 101 Jmol AstexViewer SPICE
1Y1W E 2 - 101 Jmol AstexViewer SPICE
1Y77 E 2 - 101 Jmol AstexViewer SPICE
2B63 E 2 - 101 Jmol AstexViewer SPICE
2B8K E 2 - 101 Jmol AstexViewer SPICE
2E2J E 2 - 101 Jmol AstexViewer SPICE
2JA5 E 2 - 101 Jmol AstexViewer SPICE
2JA6 E 2 - 101 Jmol AstexViewer SPICE
2JA7 E 2 - 101 Jmol AstexViewer SPICE
Q 2 - 101 Jmol AstexViewer SPICE
2JA8 E 2 - 101 Jmol AstexViewer SPICE
2NVQ E 2 - 101 Jmol AstexViewer SPICE
2NVT E 2 - 101 Jmol AstexViewer SPICE
2NVX E 2 - 101 Jmol AstexViewer SPICE
2R7Z E 2 - 101 Jmol AstexViewer SPICE
2R92 E 2 - 101 Jmol AstexViewer SPICE
2R93 E 2 - 101 Jmol AstexViewer SPICE
2VUM E 2 - 101 Jmol AstexViewer SPICE
2YU9 E 2 - 101 Jmol AstexViewer SPICE
3FKI E 2 - 101 Jmol AstexViewer SPICE
3GTL E 2 - 101 Jmol AstexViewer SPICE
3GTM E 2 - 101 Jmol AstexViewer SPICE
3GTO E 2 - 101 Jmol AstexViewer SPICE
3GTP E 2 - 101 Jmol AstexViewer SPICE
3GTQ E 2 - 101 Jmol AstexViewer SPICE
3H3V F 2 - 101 Jmol AstexViewer SPICE
3HOU E 2 - 101 Jmol AstexViewer SPICE
Q 2 - 101 Jmol AstexViewer SPICE
3HOV E 2 - 101 Jmol AstexViewer SPICE
3HOW E 2 - 101 Jmol AstexViewer SPICE
3HOX E 2 - 101 Jmol AstexViewer SPICE
3HOZ E 2 - 101 Jmol AstexViewer SPICE
3I4M E 2 - 101 Jmol AstexViewer SPICE
3I4N E 2 - 101 Jmol AstexViewer SPICE
3K1F E 2 - 101 Jmol AstexViewer SPICE
3K7A E 2 - 101 Jmol AstexViewer SPICE
3M3Y E 2 - 101 Jmol AstexViewer SPICE
3M4O E 2 - 101 Jmol AstexViewer SPICE
3PO2 E 2 - 101 Jmol AstexViewer SPICE
3PO3 E 2 - 101 Jmol AstexViewer SPICE
3QT1 E 2 - 101 Jmol AstexViewer SPICE
3RZD E 2 - 101 Jmol AstexViewer SPICE
3S14 E 2 - 101 Jmol AstexViewer SPICE
3S15 E 2 - 101 Jmol AstexViewer SPICE
3S16 E 2 - 101 Jmol AstexViewer SPICE
3S17 E 2 - 101 Jmol AstexViewer SPICE
3S1M E 2 - 101 Jmol AstexViewer SPICE
3S1N E 2 - 101 Jmol AstexViewer SPICE
3S1Q E 2 - 101 Jmol AstexViewer SPICE
3S1R E 2 - 101 Jmol AstexViewer SPICE
3S2D E 2 - 101 Jmol AstexViewer SPICE
3S2H E 2 - 101 Jmol AstexViewer SPICE
4A3B E 2 - 101 Jmol AstexViewer SPICE
4A3C E 2 - 101 Jmol AstexViewer SPICE
4A3D E 2 - 101 Jmol AstexViewer SPICE
4A3E E 2 - 101 Jmol AstexViewer SPICE
4A3F E 2 - 101 Jmol AstexViewer SPICE
4A3G E 2 - 101 Jmol AstexViewer SPICE
4A3I E 2 - 101 Jmol AstexViewer SPICE
4A3J E 2 - 101 Jmol AstexViewer SPICE
4A3K E 2 - 101 Jmol AstexViewer SPICE
4A3L E 2 - 101 Jmol AstexViewer SPICE
4A3M E 2 - 101 Jmol AstexViewer SPICE
4A93 E 2 - 101 Jmol AstexViewer SPICE
3 - 101 1K83 E 3 - 101 Jmol AstexViewer SPICE
2E2H E 3 - 101 Jmol AstexViewer SPICE
2E2I E 3 - 101 Jmol AstexViewer SPICE
2NVZ E 3 - 101 Jmol AstexViewer SPICE
3CQZ E 3 - 101 Jmol AstexViewer SPICE
3HOY E 3 - 101 Jmol AstexViewer SPICE
5 - 101 1DZF A 5 - 101 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.