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86  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPAB2_YEAST (P20435)

Summary

This is the summary of UniProt entry RPAB2_YEAST (P20435).

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC2
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 155 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
disorder n/a 1 73
disorder n/a 75 81
Pfam A RNA_pol_Rpb6 78 134

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P20435. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSDYEEAFND GNENFEDFDV EHFSDEETYE EKPQFKDGET TDANGKTIVT
50
51
GGNGPEDFQQ HEQIRRKTLK EKAIPKDQRA TTPYMTKYER ARILGTRALQ
100
101
ISMNAPVFVD LEGETDPLRI AMKELAEKKI PLVIRRYLPD GSFEDWSVEE
150
151
LIVDL                                                 
155
 

Show the unformatted sequence.

Checksums:
CRC64:AA3DEF529F94A5E4
MD5:39c319b4ec965f1549f3b1c5ae64c9bb

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb6 78 - 134 1I3Q F 78 - 134 Jmol AstexViewer SPICE
1I50 F 78 - 134 Jmol AstexViewer SPICE
1I6H F 78 - 134 Jmol AstexViewer SPICE
1K83 F 78 - 134 Jmol AstexViewer SPICE
1NIK F 78 - 134 Jmol AstexViewer SPICE
1R5U F 78 - 134 Jmol AstexViewer SPICE
1R9S F 78 - 134 Jmol AstexViewer SPICE
1R9T F 78 - 134 Jmol AstexViewer SPICE
1SFO F 78 - 134 Jmol AstexViewer SPICE
1TWA F 78 - 134 Jmol AstexViewer SPICE
1TWC F 78 - 134 Jmol AstexViewer SPICE
1TWF F 78 - 134 Jmol AstexViewer SPICE
1TWG F 78 - 134 Jmol AstexViewer SPICE
1TWH F 78 - 134 Jmol AstexViewer SPICE
1WCM F 78 - 134 Jmol AstexViewer SPICE
1Y1V F 78 - 134 Jmol AstexViewer SPICE
1Y1W F 78 - 134 Jmol AstexViewer SPICE
1Y77 F 78 - 134 Jmol AstexViewer SPICE
2B63 F 78 - 134 Jmol AstexViewer SPICE
2B8K F 78 - 134 Jmol AstexViewer SPICE
2E2H F 78 - 134 Jmol AstexViewer SPICE
2E2I F 78 - 134 Jmol AstexViewer SPICE
2E2J F 78 - 134 Jmol AstexViewer SPICE
2JA5 F 78 - 134 Jmol AstexViewer SPICE
2JA6 F 78 - 134 Jmol AstexViewer SPICE
2JA7 F 78 - 134 Jmol AstexViewer SPICE
R 78 - 134 Jmol AstexViewer SPICE
2JA8 F 78 - 134 Jmol AstexViewer SPICE
2NVQ F 78 - 134 Jmol AstexViewer SPICE
2NVT F 78 - 134 Jmol AstexViewer SPICE
2NVX F 78 - 134 Jmol AstexViewer SPICE
2NVY F 78 - 134 Jmol AstexViewer SPICE
2NVZ F 78 - 134 Jmol AstexViewer SPICE
2R7Z F 78 - 134 Jmol AstexViewer SPICE
2R92 F 78 - 134 Jmol AstexViewer SPICE
2R93 F 78 - 134 Jmol AstexViewer SPICE
2VUM F 78 - 134 Jmol AstexViewer SPICE
2YU9 F 78 - 134 Jmol AstexViewer SPICE
3CQZ F 78 - 134 Jmol AstexViewer SPICE
3FKI F 78 - 134 Jmol AstexViewer SPICE
3GTG F 78 - 134 Jmol AstexViewer SPICE
3GTJ F 78 - 134 Jmol AstexViewer SPICE
3GTK F 78 - 134 Jmol AstexViewer SPICE
3GTL F 78 - 134 Jmol AstexViewer SPICE
3GTM F 78 - 134 Jmol AstexViewer SPICE
3GTO F 78 - 134 Jmol AstexViewer SPICE
3GTP F 78 - 134 Jmol AstexViewer SPICE
3GTQ F 78 - 134 Jmol AstexViewer SPICE
3H3V G 78 - 134 Jmol AstexViewer SPICE
3HOU F 78 - 134 Jmol AstexViewer SPICE
R 78 - 134 Jmol AstexViewer SPICE
3HOV F 78 - 134 Jmol AstexViewer SPICE
3HOW F 78 - 134 Jmol AstexViewer SPICE
3HOX F 78 - 134 Jmol AstexViewer SPICE
3HOY F 78 - 134 Jmol AstexViewer SPICE
3HOZ F 78 - 134 Jmol AstexViewer SPICE
3I4M F 78 - 134 Jmol AstexViewer SPICE
3I4N F 78 - 134 Jmol AstexViewer SPICE
3K1F F 78 - 134 Jmol AstexViewer SPICE
3K7A F 78 - 134 Jmol AstexViewer SPICE
3M3Y F 78 - 134 Jmol AstexViewer SPICE
3M4O F 78 - 134 Jmol AstexViewer SPICE
3PO2 F 78 - 134 Jmol AstexViewer SPICE
3PO3 F 78 - 134 Jmol AstexViewer SPICE
3QT1 F 78 - 134 Jmol AstexViewer SPICE
3RZD F 78 - 134 Jmol AstexViewer SPICE
3S14 F 78 - 134 Jmol AstexViewer SPICE
3S15 F 78 - 134 Jmol AstexViewer SPICE
3S16 F 78 - 134 Jmol AstexViewer SPICE
3S17 F 78 - 134 Jmol AstexViewer SPICE
3S1M F 78 - 134 Jmol AstexViewer SPICE
3S1N F 78 - 134 Jmol AstexViewer SPICE
3S1Q F 78 - 134 Jmol AstexViewer SPICE
3S1R F 78 - 134 Jmol AstexViewer SPICE
3S2D F 78 - 134 Jmol AstexViewer SPICE
3S2H F 78 - 134 Jmol AstexViewer SPICE
4A3B F 78 - 134 Jmol AstexViewer SPICE
4A3C F 78 - 134 Jmol AstexViewer SPICE
4A3D F 78 - 134 Jmol AstexViewer SPICE
4A3E F 78 - 134 Jmol AstexViewer SPICE
4A3F F 78 - 134 Jmol AstexViewer SPICE
4A3G F 78 - 134 Jmol AstexViewer SPICE
4A3I F 78 - 134 Jmol AstexViewer SPICE
4A3J F 78 - 134 Jmol AstexViewer SPICE
4A3K F 78 - 134 Jmol AstexViewer SPICE
4A3L F 78 - 134 Jmol AstexViewer SPICE
4A3M F 78 - 134 Jmol AstexViewer SPICE
4A93 F 78 - 134 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.