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86  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPAB3_YEAST (P20436)

Summary

This is the summary of UniProt entry RPAB3_YEAST (P20436).

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC3
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 146 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_Rpb8 7 146
disorder n/a 70 83

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P20436. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSNTLFDDIF QVSEVDPGRY NKVCRIEAAS TTQDQCKLTL DINVELFPVA
50
51
AQDSLTVTIA SSLNLEDTPA NDSSATRSWR PPQAGDRSLA DDYDYVMYGT
100
101
AYKFEEVSKD LIAVYYSFGG LLMRLEGNYR NLNNLKQENA YLLIRR    
146
 

Show the unformatted sequence.

Checksums:
CRC64:5B71693FE6FD8863
MD5:4cc08471336d86e1f23aef38cf26a6aa

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb8 7 - 146 1I3Q H 7 - 146 Jmol AstexViewer SPICE
1I50 H 7 - 146 Jmol AstexViewer SPICE
1I6H H 7 - 146 Jmol AstexViewer SPICE
1K83 H 7 - 146 Jmol AstexViewer SPICE
1NIK H 7 - 146 Jmol AstexViewer SPICE
1R5U H 7 - 146 Jmol AstexViewer SPICE
1R9S H 7 - 146 Jmol AstexViewer SPICE
1R9T H 7 - 146 Jmol AstexViewer SPICE
1SFO H 7 - 146 Jmol AstexViewer SPICE
1TWA H 7 - 146 Jmol AstexViewer SPICE
1TWC H 7 - 146 Jmol AstexViewer SPICE
1TWF H 7 - 146 Jmol AstexViewer SPICE
1TWG H 7 - 146 Jmol AstexViewer SPICE
1TWH H 7 - 146 Jmol AstexViewer SPICE
1WCM H 7 - 146 Jmol AstexViewer SPICE
1Y1V H 7 - 146 Jmol AstexViewer SPICE
1Y1W H 7 - 146 Jmol AstexViewer SPICE
1Y77 H 7 - 146 Jmol AstexViewer SPICE
2B63 H 7 - 146 Jmol AstexViewer SPICE
2B8K H 7 - 146 Jmol AstexViewer SPICE
2E2H H 7 - 146 Jmol AstexViewer SPICE
2E2I H 7 - 146 Jmol AstexViewer SPICE
2E2J H 7 - 146 Jmol AstexViewer SPICE
2JA5 H 7 - 146 Jmol AstexViewer SPICE
2JA6 H 7 - 146 Jmol AstexViewer SPICE
2JA7 H 7 - 146 Jmol AstexViewer SPICE
T 7 - 146 Jmol AstexViewer SPICE
2JA8 H 7 - 146 Jmol AstexViewer SPICE
2NVQ H 7 - 146 Jmol AstexViewer SPICE
2NVT H 7 - 146 Jmol AstexViewer SPICE
2NVX H 7 - 146 Jmol AstexViewer SPICE
2NVY H 7 - 146 Jmol AstexViewer SPICE
2NVZ H 7 - 146 Jmol AstexViewer SPICE
2R7Z H 7 - 146 Jmol AstexViewer SPICE
2R92 H 7 - 146 Jmol AstexViewer SPICE
2R93 H 7 - 146 Jmol AstexViewer SPICE
2VUM H 7 - 146 Jmol AstexViewer SPICE
2YU9 H 7 - 146 Jmol AstexViewer SPICE
3CQZ H 7 - 146 Jmol AstexViewer SPICE
3FKI H 7 - 146 Jmol AstexViewer SPICE
3GTG H 7 - 146 Jmol AstexViewer SPICE
3GTJ H 7 - 146 Jmol AstexViewer SPICE
3GTK H 7 - 146 Jmol AstexViewer SPICE
3GTL H 7 - 146 Jmol AstexViewer SPICE
3GTM H 7 - 146 Jmol AstexViewer SPICE
3GTO H 7 - 146 Jmol AstexViewer SPICE
3GTP H 7 - 146 Jmol AstexViewer SPICE
3GTQ H 7 - 146 Jmol AstexViewer SPICE
3H3V I 7 - 146 Jmol AstexViewer SPICE
3HOU H 7 - 146 Jmol AstexViewer SPICE
T 7 - 146 Jmol AstexViewer SPICE
3HOV H 7 - 146 Jmol AstexViewer SPICE
3HOW H 7 - 146 Jmol AstexViewer SPICE
3HOX H 7 - 146 Jmol AstexViewer SPICE
3HOY H 7 - 146 Jmol AstexViewer SPICE
3HOZ H 7 - 146 Jmol AstexViewer SPICE
3I4M H 7 - 146 Jmol AstexViewer SPICE
3I4N H 7 - 146 Jmol AstexViewer SPICE
3K1F H 7 - 146 Jmol AstexViewer SPICE
3K7A H 7 - 146 Jmol AstexViewer SPICE
3M3Y H 7 - 146 Jmol AstexViewer SPICE
3M4O H 7 - 146 Jmol AstexViewer SPICE
3PO2 H 7 - 146 Jmol AstexViewer SPICE
3PO3 H 7 - 146 Jmol AstexViewer SPICE
3QT1 H 7 - 146 Jmol AstexViewer SPICE
3RZD H 7 - 146 Jmol AstexViewer SPICE
3S14 H 7 - 146 Jmol AstexViewer SPICE
3S15 H 7 - 146 Jmol AstexViewer SPICE
3S16 H 7 - 146 Jmol AstexViewer SPICE
3S17 H 7 - 146 Jmol AstexViewer SPICE
3S1M H 7 - 146 Jmol AstexViewer SPICE
3S1N H 7 - 146 Jmol AstexViewer SPICE
3S1Q H 7 - 146 Jmol AstexViewer SPICE
3S1R H 7 - 146 Jmol AstexViewer SPICE
3S2D H 7 - 146 Jmol AstexViewer SPICE
3S2H H 7 - 146 Jmol AstexViewer SPICE
4A3B H 7 - 146 Jmol AstexViewer SPICE
4A3C H 7 - 146 Jmol AstexViewer SPICE
4A3D H 7 - 146 Jmol AstexViewer SPICE
4A3E H 7 - 146 Jmol AstexViewer SPICE
4A3F H 7 - 146 Jmol AstexViewer SPICE
4A3G H 7 - 146 Jmol AstexViewer SPICE
4A3I H 7 - 146 Jmol AstexViewer SPICE
4A3J H 7 - 146 Jmol AstexViewer SPICE
4A3K H 7 - 146 Jmol AstexViewer SPICE
4A3L H 7 - 146 Jmol AstexViewer SPICE
4A3M H 7 - 146 Jmol AstexViewer SPICE
4A93 H 7 - 146 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.