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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: AMYB_PAEPO (P21543)

Summary

This is the summary of UniProt entry AMYB_PAEPO (P21543).

Description: Beta/alpha-amylase Beta-amylase Alpha-amylase EC=3.2.1.2 EC=3.2.1.1
Source organism: Paenibacillus polymyxa (Bacillus polymyxa) (NCBI taxonomy ID 1406)
Length: 1196 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 35
low_complexity n/a 14 22
Pfam A Glyco_hydro_14 44 441
Pfam A CBM_25 458 536
disorder n/a 515 521
low_complexity n/a 517 530
disorder n/a 525 539
disorder n/a 542 567
low_complexity n/a 554 569
Pfam A CBM_25 568 646
disorder n/a 594 595
disorder n/a 623 631
low_complexity n/a 627 640
disorder n/a 636 638
disorder n/a 644 646
disorder n/a 653 662
disorder n/a 684 687
disorder n/a 689 691
disorder n/a 693 694
disorder n/a 700 701
disorder n/a 708 719
disorder n/a 726 728
disorder n/a 762 775
Pfam A Alpha-amylase 783 1082
disorder n/a 892 893
disorder n/a 909 913
low_complexity n/a 1008 1018
disorder n/a 1073 1088
disorder n/a 1110 1111
disorder n/a 1114 1118
disorder n/a 1158 1163
disorder n/a 1168 1172

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P21543. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MTLYRSLWKK GCMLLLSLVL SLTAFIGSPS NTASAAVADD FQASVMGPLA
50
51
KINDWGSFKK QLQTLKNNGV YAITTDVWWG YVESAGDNQF DWSYYKTYAN
100
101
AVKEAGLKWV PIISTHKCGG NVGDDCNIPL PSWLSSKGSA DEMQFKDESG
150
151
YANSEALSPL WSGTGKQYDE LYASFAENFA GYKSIIPKIY LSGGPSGELR
200
201
YPSYYPAAGW SYPGRGKFQA YTETAKNAFR TAMNDKYGSL DKINAAWGTK
250
251
LTSLSQINPP TDGDGFYTNG GYNSAYGKDF LSWYQSVLEK HLGVIGAAAH
300
301
KNFDSVFGVR IGAKISGLHW QMNNPAMPHG TEQAGGYYDY NRLIQKFKDA
350
351
DLDLTFTCLE MSDSGTAPNY SLPSTLVDTV SSIANAKGVR LNGENALPTG
400
401
GSGFQKIEEK ITKFGYHGFT LLRINNLVNN DGSPTGELSG FKQYIISKAK
450
451
PDNNGGTGNK VTIYYKKGFN SPYIHYRPAG GSWTAAPGVK MQDAEISGYA
500
501
KITVDIGSAS QLEAAFNDGN NNWDSNNTKN YSFSTGTSTY TPGNSGNAGT
550
551
ITSGAPAGAN PGDGGGTTNK VTVYYKKGFN SPYIHYRPAG GSWTAAPGVK
600
601
MQDAEISGYA KITVDIGSAS QLEAAFNDGN NNWDSNNTKN YLFSTGTSTY
650
651
TPGSNGAAGT IRTGAPSGSV LSVVTSTYAT DLNEVTGPIQ TEKLSGVSLN
700
701
VSTSTYAPNS NGVEVTAQTE APSGAFTSMD LGTLSNPTSL NTDWSKQSIY
750
751
FIMTDRFSNG DPSNDNYGGF NSNNSDQRKW HGGDFQGIIN KLDYIKNMGF
800
801
TAIWITPVTM QKSEYAYHGY HTYDFYAVDG HLGTMDKLQE LVRKAHDKNI
850
851
AVMVDVVVNH TGDFQPGNGF AKAPFDKADW YHHNGDITDG DYNSNNQWKI
900
901
ENGDVAGLDD LNHENPATAN ELKNWIKWLL NETGIDGLRL DTVKHVPKGF
950
951
LKDFDQAANT FTMGEIFHGD PAYVGDYTRY LDAALDFPMY YTIKDVFGHD
1000
1001
QSMRKIKDRY SDDRYYRDAQ TNGVFIDNHD VKRFLNDASG KPGANYDKWP
1050
1051
QLKAALGFTL TSRGIPIIYQ GTEQGYSGGD DPANRENMNF NANHDLYQYI
1100
1101
AKLNYVRNNH PALQNGSQRE KWVDDSFYSF QRSKNGDEAI VFINNSWNSQ
1150
1151
TRTIGNFDNL SNGTRLTNQL SNDSVQINNG SITVTLAPKE VKVFTK    
1196
 

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Checksums:
CRC64:A41EA6B70F257064
MD5:e20e1c5a190577ca16581803887638a0

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
CBM_25 458 - 536 2LAA A 423 - 501 Jmol AstexViewer SPICE
568 - 646 2LAB A 533 - 611 Jmol AstexViewer SPICE