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86  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPB9_YEAST (P27999)

Summary

This is the summary of UniProt entry RPB9_YEAST (P27999).

Description: DNA-directed RNA polymerase II subunit RPB9
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 122 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_POL_M_15KD 4 41
disorder n/a 60 63
Pfam A TFIIS_C 73 111
disorder n/a 121 122

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P27999. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MTTFRFCRDC NNMLYPREDK ENNRLLFECR TCSYVEEAGS PLVYRHELIT
50
51
NIGETAGVVQ DIGSDPTLPR SDRECPKCHS RENVFFQSQQ RRKDTSMVLF
100
101
FVCLSCSHIF TSDQKNKRTQ FS                              
122
 

Show the unformatted sequence.

Checksums:
CRC64:A80D69678A722881
MD5:787f5a71a0ce3f51e0bf3a7ff06a088b

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_POL_M_15KD 4 - 41 1I3Q I 4 - 41 Jmol AstexViewer SPICE
1I50 I 4 - 41 Jmol AstexViewer SPICE
1I6H I 4 - 41 Jmol AstexViewer SPICE
1K83 I 4 - 41 Jmol AstexViewer SPICE
1NIK I 4 - 41 Jmol AstexViewer SPICE
1R5U I 4 - 41 Jmol AstexViewer SPICE
1R9S I 4 - 41 Jmol AstexViewer SPICE
1R9T I 4 - 41 Jmol AstexViewer SPICE
1SFO I 4 - 41 Jmol AstexViewer SPICE
1TWA I 4 - 41 Jmol AstexViewer SPICE
1TWC I 4 - 41 Jmol AstexViewer SPICE
1TWF I 4 - 41 Jmol AstexViewer SPICE
1TWG I 4 - 41 Jmol AstexViewer SPICE
1TWH I 4 - 41 Jmol AstexViewer SPICE
1WCM I 4 - 41 Jmol AstexViewer SPICE
1Y1V I 4 - 41 Jmol AstexViewer SPICE
1Y1W I 4 - 41 Jmol AstexViewer SPICE
1Y77 I 4 - 41 Jmol AstexViewer SPICE
2B63 I 4 - 41 Jmol AstexViewer SPICE
2B8K I 4 - 41 Jmol AstexViewer SPICE
2E2H I 4 - 41 Jmol AstexViewer SPICE
2E2I I 4 - 41 Jmol AstexViewer SPICE
2E2J I 4 - 41 Jmol AstexViewer SPICE
2JA5 I 4 - 41 Jmol AstexViewer SPICE
2JA6 I 4 - 41 Jmol AstexViewer SPICE
2JA7 I 4 - 41 Jmol AstexViewer SPICE
U 4 - 41 Jmol AstexViewer SPICE
2JA8 I 4 - 41 Jmol AstexViewer SPICE
2NVQ I 4 - 41 Jmol AstexViewer SPICE
2NVT I 4 - 41 Jmol AstexViewer SPICE
2NVX I 4 - 41 Jmol AstexViewer SPICE
2NVY I 4 - 41 Jmol AstexViewer SPICE
2NVZ I 4 - 41 Jmol AstexViewer SPICE
2R7Z I 4 - 41 Jmol AstexViewer SPICE
2R92 I 4 - 41 Jmol AstexViewer SPICE
2R93 I 4 - 41 Jmol AstexViewer SPICE
2VUM I 4 - 41 Jmol AstexViewer SPICE
2YU9 I 4 - 41 Jmol AstexViewer SPICE
3CQZ I 4 - 41 Jmol AstexViewer SPICE
3FKI I 4 - 41 Jmol AstexViewer SPICE
3GTG I 4 - 41 Jmol AstexViewer SPICE
3GTJ I 4 - 41 Jmol AstexViewer SPICE
3GTK I 4 - 41 Jmol AstexViewer SPICE
3GTL I 4 - 41 Jmol AstexViewer SPICE
3GTM I 4 - 41 Jmol AstexViewer SPICE
3GTO I 4 - 41 Jmol AstexViewer SPICE
3GTP I 4 - 41 Jmol AstexViewer SPICE
3GTQ I 4 - 41 Jmol AstexViewer SPICE
3H3V J 4 - 41 Jmol AstexViewer SPICE
3HOU I 4 - 41 Jmol AstexViewer SPICE
U 4 - 41 Jmol AstexViewer SPICE
3HOV I 4 - 41 Jmol AstexViewer SPICE
3HOW I 4 - 41 Jmol AstexViewer SPICE
3HOX I 4 - 41 Jmol AstexViewer SPICE
3HOY I 4 - 41 Jmol AstexViewer SPICE
3HOZ I 4 - 41 Jmol AstexViewer SPICE
3I4M I 4 - 41 Jmol AstexViewer SPICE
3I4N I 4 - 41 Jmol AstexViewer SPICE
3K1F I 4 - 41 Jmol AstexViewer SPICE
3K7A I 4 - 41 Jmol AstexViewer SPICE
3M3Y I 4 - 41 Jmol AstexViewer SPICE
3M4O I 4 - 41 Jmol AstexViewer SPICE
3PO2 I 4 - 41 Jmol AstexViewer SPICE
3PO3 I 4 - 41 Jmol AstexViewer SPICE
3QT1 I 4 - 41 Jmol AstexViewer SPICE
3RZD I 4 - 41 Jmol AstexViewer SPICE
3S14 I 4 - 41 Jmol AstexViewer SPICE
3S15 I 4 - 41 Jmol AstexViewer SPICE
3S16 I 4 - 41 Jmol AstexViewer SPICE
3S17 I 4 - 41 Jmol AstexViewer SPICE
3S1M I 4 - 41 Jmol AstexViewer SPICE
3S1N I 4 - 41 Jmol AstexViewer SPICE
3S1Q I 4 - 41 Jmol AstexViewer SPICE
3S1R I 4 - 41 Jmol AstexViewer SPICE
3S2D I 4 - 41 Jmol AstexViewer SPICE
3S2H I 4 - 41 Jmol AstexViewer SPICE
4A3B I 4 - 41 Jmol AstexViewer SPICE
4A3C I 4 - 41 Jmol AstexViewer SPICE
4A3D I 4 - 41 Jmol AstexViewer SPICE
4A3E I 4 - 41 Jmol AstexViewer SPICE
4A3F I 4 - 41 Jmol AstexViewer SPICE
4A3G I 4 - 41 Jmol AstexViewer SPICE
4A3I I 4 - 41 Jmol AstexViewer SPICE
4A3J I 4 - 41 Jmol AstexViewer SPICE
4A3K I 4 - 41 Jmol AstexViewer SPICE
4A3L I 4 - 41 Jmol AstexViewer SPICE
4A3M I 4 - 41 Jmol AstexViewer SPICE
4A93 I 4 - 41 Jmol AstexViewer SPICE
TFIIS_C 73 - 111 1I3Q I 73 - 111 Jmol AstexViewer SPICE
1I50 I 73 - 111 Jmol AstexViewer SPICE
1I6H I 73 - 111 Jmol AstexViewer SPICE
1K83 I 73 - 111 Jmol AstexViewer SPICE
1NIK I 73 - 111 Jmol AstexViewer SPICE
1R5U I 73 - 111 Jmol AstexViewer SPICE
1R9S I 73 - 111 Jmol AstexViewer SPICE
1R9T I 73 - 111 Jmol AstexViewer SPICE
1SFO I 73 - 111 Jmol AstexViewer SPICE
1TWA I 73 - 111 Jmol AstexViewer SPICE
1TWC I 73 - 111 Jmol AstexViewer SPICE
1TWF I 73 - 111 Jmol AstexViewer SPICE
1TWG I 73 - 111 Jmol AstexViewer SPICE
1TWH I 73 - 111 Jmol AstexViewer SPICE
1WCM I 73 - 111 Jmol AstexViewer SPICE
1Y1V I 73 - 111 Jmol AstexViewer SPICE
1Y1W I 73 - 111 Jmol AstexViewer SPICE
1Y77 I 73 - 111 Jmol AstexViewer SPICE
2B63 I 73 - 111 Jmol AstexViewer SPICE
2B8K I 73 - 111 Jmol AstexViewer SPICE
2E2H I 73 - 111 Jmol AstexViewer SPICE
2E2I I 73 - 111 Jmol AstexViewer SPICE
2E2J I 73 - 111 Jmol AstexViewer SPICE
2JA5 I 73 - 111 Jmol AstexViewer SPICE
2JA6 I 73 - 111 Jmol AstexViewer SPICE
2JA7 I 73 - 111 Jmol AstexViewer SPICE
U 73 - 111 Jmol AstexViewer SPICE
2JA8 I 73 - 111 Jmol AstexViewer SPICE
2NVQ I 73 - 111 Jmol AstexViewer SPICE
2NVT I 73 - 111 Jmol AstexViewer SPICE
2NVX I 73 - 111 Jmol AstexViewer SPICE
2NVY I 73 - 111 Jmol AstexViewer SPICE
2NVZ I 73 - 111 Jmol AstexViewer SPICE
2R7Z I 73 - 111 Jmol AstexViewer SPICE
2R92 I 73 - 111 Jmol AstexViewer SPICE
2R93 I 73 - 111 Jmol AstexViewer SPICE
2VUM I 73 - 111 Jmol AstexViewer SPICE
2YU9 I 73 - 111 Jmol AstexViewer SPICE
3CQZ I 73 - 111 Jmol AstexViewer SPICE
3FKI I 73 - 111 Jmol AstexViewer SPICE
3GTG I 73 - 111 Jmol AstexViewer SPICE
3GTJ I 73 - 111 Jmol AstexViewer SPICE
3GTK I 73 - 111 Jmol AstexViewer SPICE
3GTL I 73 - 111 Jmol AstexViewer SPICE
3GTM I 73 - 111 Jmol AstexViewer SPICE
3GTO I 73 - 111 Jmol AstexViewer SPICE
3GTP I 73 - 111 Jmol AstexViewer SPICE
3GTQ I 73 - 111 Jmol AstexViewer SPICE
3H3V J 73 - 111 Jmol AstexViewer SPICE
3HOU I 73 - 111 Jmol AstexViewer SPICE
U 73 - 111 Jmol AstexViewer SPICE
3HOV I 73 - 111 Jmol AstexViewer SPICE
3HOW I 73 - 111 Jmol AstexViewer SPICE
3HOX I 73 - 111 Jmol AstexViewer SPICE
3HOY I 73 - 111 Jmol AstexViewer SPICE
3HOZ I 73 - 111 Jmol AstexViewer SPICE
3I4M I 73 - 111 Jmol AstexViewer SPICE
3I4N I 73 - 111 Jmol AstexViewer SPICE
3K1F I 73 - 111 Jmol AstexViewer SPICE
3K7A I 73 - 111 Jmol AstexViewer SPICE
3M3Y I 73 - 111 Jmol AstexViewer SPICE
3M4O I 73 - 111 Jmol AstexViewer SPICE
3PO2 I 73 - 111 Jmol AstexViewer SPICE
3PO3 I 73 - 111 Jmol AstexViewer SPICE
3RZD I 73 - 111 Jmol AstexViewer SPICE
3S14 I 73 - 111 Jmol AstexViewer SPICE
3S15 I 73 - 111 Jmol AstexViewer SPICE
3S16 I 73 - 111 Jmol AstexViewer SPICE
3S17 I 73 - 111 Jmol AstexViewer SPICE
3S1M I 73 - 111 Jmol AstexViewer SPICE
3S1N I 73 - 111 Jmol AstexViewer SPICE
3S1Q I 73 - 111 Jmol AstexViewer SPICE
3S1R I 73 - 111 Jmol AstexViewer SPICE
3S2D I 73 - 111 Jmol AstexViewer SPICE
3S2H I 73 - 111 Jmol AstexViewer SPICE
4A3B I 73 - 111 Jmol AstexViewer SPICE
4A3C I 73 - 111 Jmol AstexViewer SPICE
4A3D I 73 - 111 Jmol AstexViewer SPICE
4A3E I 73 - 111 Jmol AstexViewer SPICE
4A3F I 73 - 111 Jmol AstexViewer SPICE
4A3G I 73 - 111 Jmol AstexViewer SPICE
4A3I I 73 - 111 Jmol AstexViewer SPICE
4A3J I 73 - 111 Jmol AstexViewer SPICE
4A3K I 73 - 111 Jmol AstexViewer SPICE
4A3L I 73 - 111 Jmol AstexViewer SPICE
4A3M I 73 - 111 Jmol AstexViewer SPICE
4A93 I 73 - 111 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.