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9  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: AMY_PSEHA (P29957)

Summary

This is the summary of UniProt entry AMY_PSEHA (P29957).

Description: Alpha-amylase EC=3.2.1.1
Source organism: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) (NCBI taxonomy ID 228)
Length: 669 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 24
Pfam A Alpha-amylase 35 327
low_complexity n/a 116 129
disorder n/a 294 295
disorder n/a 337 338
low_complexity n/a 338 349
Pfam A Alpha-amylase_C 385 470
disorder n/a 474 476
disorder n/a 563 567

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P29957. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKLNKIITTA GLSLGLLLPS IATATPTTFV HLFEWNWQDV AQECEQYLGP
50
51
KGYAAVQVSP PNEHITGSQW WTRYQPVSYE LQSRGGNRAQ FIDMVNRCSA
100
101
AGVDIYVDTL INHMAAGSGT GTAGNSFGNK SFPIYSPQDF HESCTINNSD
150
151
YGNDRYRVQN CELVGLADLD TASNYVQNTI AAYINDLQAI GVKGFRFDAS
200
201
KHVAASDIQS LMAKVNGSPV VFQEVIDQGG EAVGASEYLS TGLVTEFKYS
250
251
TELGNTFRNG SLAWLSNFGE GWGFMPSSSA VVFVDNHDNQ RGHGGAGNVI
300
301
TFEDGRLYDL ANVFMLAYPY GYPKVMSSYD FHGDTDAGGP NVPVHNNGNL
350
351
ECFASNWKCE HRWSYIAGGV DFRNNTADNW AVTNWWDNTN NQISFGRGSS
400
401
GHMAINKEDS TLTATVQTDM ASGQYCNVLK GELSADAKSC SGEVITVNSD
450
451
GTINLNIGAW DAMAIHKNAK LNTSSASSTE SDWQRTVIFI NAQTQSGQDM
500
501
FIRGGIDHAY ANANLGRNCQ TSNFECAMPI RHNNLKNVTT SPWKANDNYL
550
551
DWYGIENGQS SEAEGSATDW TTNVWPAGWG AEKTVNTDGF GVTPLNIWGE
600
601
HYWMLDVDMD CSKAVNGWFE LKAFIKNGQG WETAIAQDNA PYTSTNHMAQ
650
651
CGKINKFEFN NSGVVIRSF                                  
669
 

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Checksums:
CRC64:E3DD316D92B91EB7
MD5:201f01d5bfe2fc221bbc6a9e7873bad9

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Alpha-amylase 35 - 327 1AQH A 11 - 303 Jmol AstexViewer SPICE
1AQM A 11 - 303 Jmol AstexViewer SPICE
1B0I A 11 - 303 Jmol AstexViewer SPICE
1G94 A 11 - 303 Jmol AstexViewer SPICE
1G9H A 11 - 303 Jmol AstexViewer SPICE
1JD7 A 11 - 303 Jmol AstexViewer SPICE
1JD9 A 11 - 303 Jmol AstexViewer SPICE
1KXH A 11 - 303 Jmol AstexViewer SPICE
1L0P A 11 - 303 Jmol AstexViewer SPICE
Alpha-amylase_C 385 - 470 1AQH A 361 - 446 Jmol AstexViewer SPICE
1AQM A 361 - 446 Jmol AstexViewer SPICE
1B0I A 361 - 446 Jmol AstexViewer SPICE
1G94 A 361 - 446 Jmol AstexViewer SPICE
1G9H A 361 - 446 Jmol AstexViewer SPICE
1JD7 A 361 - 446 Jmol AstexViewer SPICE
1JD9 A 361 - 446 Jmol AstexViewer SPICE
1KXH A 361 - 446 Jmol AstexViewer SPICE
1L0P A 361 - 446 Jmol AstexViewer SPICE