Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
6  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: COX1_RHOSH (P33517)

Summary

This is the summary of UniProt entry COX1_RHOSH (P33517).

Description: Cytochrome c oxidase subunit 1 EC=1.9.3.1
Source organism: Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides) (NCBI taxonomy ID 1063)
Length: 566 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A COX1 26 504
transmembrane n/a 29 51
transmembrane n/a 104 123
transmembrane n/a 143 162
transmembrane n/a 189 215
transmembrane n/a 227 254
transmembrane n/a 287 306
transmembrane n/a 313 334
transmembrane n/a 346 369
transmembrane n/a 381 400
transmembrane n/a 420 440
transmembrane n/a 452 473
transmembrane n/a 493 519
low_complexity n/a 495 514
disorder n/a 553 556

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P33517. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MADAAIHGHE HDRRGFFTRW FMSTNHKDIG VLYLFTGGLV GLISVAFTVY
50
51
MRMELMAPGV QFMCAEHLES GLVKGFFQSL WPSAVENCTP NGHLWNVMIT
100
101
GHGILMMFFV VIPALFGGFG NYFMPLHIGA PDMAFPRMNN LSYWLYVAGT
150
151
SLAVASLFAP GGNGQLGSGI GWVLYPPLST SESGYSTDLA IFAVHLSGAS
200
201
SILGAINMIT TFLNMRAPGM TMHKVPLFAW SIFVTAWLIL LALPVLAGAI
250
251
TMLLTDRNFG TTFFQPSGGG DPVLYQHILW FFGHPEVYII VLPAFGIVSH
300
301
VIATFAKKPI FGYLPMVYAM VAIGVLGFVV WAHHMYTAGL SLTQQSYFMM
350
351
ATMVIAVPTG IKIFSWIATM WGGSIELKTP MLWALGFLFL FTVGGVTGIV
400
401
LSQASVDRYY HDTYYVVAHF HYVMSLGAVF GIFAGIYFWI GKMSGRQYPE
450
451
WAGKLHFWMM FVGANLTFFP QHFLGRQGMP RRYIDYPEAF ATWNFVSSLG
500
501
AFLSFASFLF FLGVIFYTLT RGARVTANNY WNEHADTLEW TLTSPPPEHT
550
551
FEQLPKREDW ERAPAH                                     
566
 

Show the unformatted sequence.

Checksums:
CRC64:65A74DBCC5C550B0
MD5:99b214973139b7d8229b1bc9a72dd480

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
COX1 26 - 504 1M56 A 26 - 504 Jmol AstexViewer SPICE
G 26 - 504 Jmol AstexViewer SPICE
1M57 A 26 - 504 Jmol AstexViewer SPICE
G 26 - 504 Jmol AstexViewer SPICE
2GSM A 26 - 504 Jmol AstexViewer SPICE
C 26 - 504 Jmol AstexViewer SPICE
3DTU A 26 - 504 Jmol AstexViewer SPICE
C 26 - 504 Jmol AstexViewer SPICE
3FYE A 26 - 504 Jmol AstexViewer SPICE
C 26 - 504 Jmol AstexViewer SPICE
3FYI A 26 - 504 Jmol AstexViewer SPICE
C 26 - 504 Jmol AstexViewer SPICE