Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
41  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPB7_YEAST (P34087)

Summary

This is the summary of UniProt entry RPB7_YEAST (P34087).

Description: DNA-directed RNA polymerase II subunit RPB7
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 171 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A SHS2_Rpb7-N 8 79
Pfam A S1 80 161

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P34087. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MFFIKDLSLN ITLHPSFFGP RMKQYLKTKL LEEVEGSCTG KFGYILCVLD
50
51
YDNIDIQRGR ILPTDGSAEF NVKYRAVVFK PFKGEVVDGT VVSCSQHGFE
100
101
VQVGPMKVFV TKHLMPQDLT FNAGSNPPSY QSSEDVITIK SRIRVKIEGC
150
151
ISQVSSIHAI GSIKEDYLGA I                               
171
 

Show the unformatted sequence.

Checksums:
CRC64:44C85603A93CDE67
MD5:f7f9c7705bbae7a64e784ebe968d6d93

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
S1 80 - 161 1WCM G 80 - 161 Jmol AstexViewer SPICE
1Y14 B 80 - 161 Jmol AstexViewer SPICE
D 80 - 161 Jmol AstexViewer SPICE
1Y1V G 80 - 161 Jmol AstexViewer SPICE
1Y1W G 80 - 161 Jmol AstexViewer SPICE
1Y77 G 80 - 161 Jmol AstexViewer SPICE
2B63 G 80 - 161 Jmol AstexViewer SPICE
2B8K G 80 - 161 Jmol AstexViewer SPICE
2JA5 G 80 - 161 Jmol AstexViewer SPICE
2JA6 G 80 - 161 Jmol AstexViewer SPICE
2JA7 G 80 - 161 Jmol AstexViewer SPICE
S 80 - 161 Jmol AstexViewer SPICE
2JA8 G 80 - 161 Jmol AstexViewer SPICE
2R7Z G 80 - 161 Jmol AstexViewer SPICE
2R92 G 80 - 161 Jmol AstexViewer SPICE
2R93 G 80 - 161 Jmol AstexViewer SPICE
2VUM G 80 - 161 Jmol AstexViewer SPICE
3FKI G 80 - 161 Jmol AstexViewer SPICE
3H3V H 80 - 161 Jmol AstexViewer SPICE
3HOU G 80 - 161 Jmol AstexViewer SPICE
S 80 - 161 Jmol AstexViewer SPICE
3HOV G 80 - 161 Jmol AstexViewer SPICE
3HOW G 80 - 161 Jmol AstexViewer SPICE
3HOX G 80 - 161 Jmol AstexViewer SPICE
3HOY G 80 - 161 Jmol AstexViewer SPICE
3HOZ G 80 - 161 Jmol AstexViewer SPICE
3I4M G 80 - 161 Jmol AstexViewer SPICE
3I4N G 80 - 161 Jmol AstexViewer SPICE
3K1F G 80 - 161 Jmol AstexViewer SPICE
3PO2 G 80 - 161 Jmol AstexViewer SPICE
3PO3 G 80 - 161 Jmol AstexViewer SPICE
3QT1 G 80 - 161 Jmol AstexViewer SPICE
4A3B G 80 - 161 Jmol AstexViewer SPICE
4A3C G 80 - 161 Jmol AstexViewer SPICE
4A3D G 80 - 161 Jmol AstexViewer SPICE
4A3E G 80 - 161 Jmol AstexViewer SPICE
4A3F G 80 - 161 Jmol AstexViewer SPICE
4A3G G 80 - 161 Jmol AstexViewer SPICE
4A3I G 80 - 161 Jmol AstexViewer SPICE
4A3J G 80 - 161 Jmol AstexViewer SPICE
4A3K G 80 - 161 Jmol AstexViewer SPICE
4A3L G 80 - 161 Jmol AstexViewer SPICE
4A3M G 80 - 161 Jmol AstexViewer SPICE
4A93 G 80 - 161 Jmol AstexViewer SPICE
SHS2_Rpb7-N 8 - 79 1WCM G 8 - 79 Jmol AstexViewer SPICE
1Y14 B 8 - 79 Jmol AstexViewer SPICE
D 8 - 79 Jmol AstexViewer SPICE
1Y1V G 8 - 79 Jmol AstexViewer SPICE
1Y1W G 8 - 79 Jmol AstexViewer SPICE
1Y77 G 8 - 79 Jmol AstexViewer SPICE
2B63 G 8 - 79 Jmol AstexViewer SPICE
2B8K G 8 - 79 Jmol AstexViewer SPICE
2JA5 G 8 - 79 Jmol AstexViewer SPICE
2JA6 G 8 - 79 Jmol AstexViewer SPICE
2JA7 G 8 - 79 Jmol AstexViewer SPICE
S 8 - 79 Jmol AstexViewer SPICE
2JA8 G 8 - 79 Jmol AstexViewer SPICE
2R7Z G 8 - 79 Jmol AstexViewer SPICE
2R92 G 8 - 79 Jmol AstexViewer SPICE
2R93 G 8 - 79 Jmol AstexViewer SPICE
2VUM G 8 - 79 Jmol AstexViewer SPICE
3FKI G 8 - 79 Jmol AstexViewer SPICE
3H3V H 8 - 79 Jmol AstexViewer SPICE
3HOU G 8 - 79 Jmol AstexViewer SPICE
S 8 - 79 Jmol AstexViewer SPICE
3HOV G 8 - 79 Jmol AstexViewer SPICE
3HOW G 8 - 79 Jmol AstexViewer SPICE
3HOX G 8 - 79 Jmol AstexViewer SPICE
3HOY G 8 - 79 Jmol AstexViewer SPICE
3HOZ G 8 - 79 Jmol AstexViewer SPICE
3I4M G 8 - 79 Jmol AstexViewer SPICE
3I4N G 8 - 79 Jmol AstexViewer SPICE
3K1F G 8 - 79 Jmol AstexViewer SPICE
3PO2 G 8 - 79 Jmol AstexViewer SPICE
3PO3 G 8 - 79 Jmol AstexViewer SPICE
3QT1 G 8 - 79 Jmol AstexViewer SPICE
4A3B G 8 - 79 Jmol AstexViewer SPICE
4A3C G 8 - 79 Jmol AstexViewer SPICE
4A3D G 8 - 79 Jmol AstexViewer SPICE
4A3E G 8 - 79 Jmol AstexViewer SPICE
4A3F G 8 - 79 Jmol AstexViewer SPICE
4A3G G 8 - 79 Jmol AstexViewer SPICE
4A3I G 8 - 79 Jmol AstexViewer SPICE
4A3J G 8 - 79 Jmol AstexViewer SPICE
4A3K G 8 - 79 Jmol AstexViewer SPICE
4A3L G 8 - 79 Jmol AstexViewer SPICE
4A3M G 8 - 79 Jmol AstexViewer SPICE
4A93 G 8 - 79 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.