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86  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPB11_YEAST (P38902)

Summary

This is the summary of UniProt entry RPB11_YEAST (P38902).

Description: DNA-directed RNA polymerase II subunit RPB11
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 120 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_L_2 29 105

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P38902. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MNAPDRFELF LLGEGESKLK IDPDTKAPNA VVITFEKEDH TLGNLIRAEL
50
51
LNDRKVLFAA YKVEHPFFAR FKLRIQTTEG YDPKDALKNA CNSIINKLGA
100
101
LKTNFETEWN LQTLAADDAF                                 
120
 

Show the unformatted sequence.

Checksums:
CRC64:A98D109C5FF8E356
MD5:1667130cdc339ce388ac923689eeb4d7

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_L_2 29 - 105 1I3Q K 29 - 105 Jmol AstexViewer SPICE
1I50 K 29 - 105 Jmol AstexViewer SPICE
1I6H K 29 - 105 Jmol AstexViewer SPICE
1K83 K 29 - 105 Jmol AstexViewer SPICE
1NIK K 29 - 105 Jmol AstexViewer SPICE
1R5U K 29 - 105 Jmol AstexViewer SPICE
1R9S K 29 - 105 Jmol AstexViewer SPICE
1R9T K 29 - 105 Jmol AstexViewer SPICE
1SFO K 29 - 105 Jmol AstexViewer SPICE
1TWA K 29 - 105 Jmol AstexViewer SPICE
1TWC K 29 - 105 Jmol AstexViewer SPICE
1TWF K 29 - 105 Jmol AstexViewer SPICE
1TWG K 29 - 105 Jmol AstexViewer SPICE
1TWH K 29 - 105 Jmol AstexViewer SPICE
1WCM K 29 - 105 Jmol AstexViewer SPICE
1Y1V K 29 - 105 Jmol AstexViewer SPICE
1Y1W K 29 - 105 Jmol AstexViewer SPICE
1Y77 K 29 - 105 Jmol AstexViewer SPICE
2B63 K 29 - 105 Jmol AstexViewer SPICE
2B8K K 29 - 105 Jmol AstexViewer SPICE
2E2H K 29 - 105 Jmol AstexViewer SPICE
2E2I K 29 - 105 Jmol AstexViewer SPICE
2E2J K 29 - 105 Jmol AstexViewer SPICE
2JA5 K 29 - 105 Jmol AstexViewer SPICE
2JA6 K 29 - 105 Jmol AstexViewer SPICE
2JA7 K 29 - 105 Jmol AstexViewer SPICE
W 29 - 105 Jmol AstexViewer SPICE
2JA8 K 29 - 105 Jmol AstexViewer SPICE
2NVQ K 29 - 105 Jmol AstexViewer SPICE
2NVT K 29 - 105 Jmol AstexViewer SPICE
2NVX K 29 - 105 Jmol AstexViewer SPICE
2NVY K 29 - 105 Jmol AstexViewer SPICE
2NVZ K 29 - 105 Jmol AstexViewer SPICE
2R7Z K 29 - 105 Jmol AstexViewer SPICE
2R92 K 29 - 105 Jmol AstexViewer SPICE
2R93 K 29 - 105 Jmol AstexViewer SPICE
2VUM K 29 - 105 Jmol AstexViewer SPICE
2YU9 K 29 - 105 Jmol AstexViewer SPICE
3CQZ K 29 - 105 Jmol AstexViewer SPICE
3FKI K 29 - 105 Jmol AstexViewer SPICE
3GTG K 29 - 105 Jmol AstexViewer SPICE
3GTJ K 29 - 105 Jmol AstexViewer SPICE
3GTK K 29 - 105 Jmol AstexViewer SPICE
3GTL K 29 - 105 Jmol AstexViewer SPICE
3GTM K 29 - 105 Jmol AstexViewer SPICE
3GTO K 29 - 105 Jmol AstexViewer SPICE
3GTP K 29 - 105 Jmol AstexViewer SPICE
3GTQ K 29 - 105 Jmol AstexViewer SPICE
3H3V L 29 - 105 Jmol AstexViewer SPICE
3HOU K 29 - 105 Jmol AstexViewer SPICE
W 29 - 105 Jmol AstexViewer SPICE
3HOV K 29 - 105 Jmol AstexViewer SPICE
3HOW K 29 - 105 Jmol AstexViewer SPICE
3HOX K 29 - 105 Jmol AstexViewer SPICE
3HOY K 29 - 105 Jmol AstexViewer SPICE
3HOZ K 29 - 105 Jmol AstexViewer SPICE
3I4M K 29 - 105 Jmol AstexViewer SPICE
3I4N K 29 - 105 Jmol AstexViewer SPICE
3K1F K 29 - 105 Jmol AstexViewer SPICE
3K7A K 29 - 105 Jmol AstexViewer SPICE
3M3Y K 29 - 105 Jmol AstexViewer SPICE
3M4O K 29 - 105 Jmol AstexViewer SPICE
3PO2 K 29 - 105 Jmol AstexViewer SPICE
3PO3 K 29 - 105 Jmol AstexViewer SPICE
3QT1 K 29 - 105 Jmol AstexViewer SPICE
3RZD K 29 - 105 Jmol AstexViewer SPICE
3S14 K 29 - 105 Jmol AstexViewer SPICE
3S15 K 29 - 105 Jmol AstexViewer SPICE
3S16 K 29 - 105 Jmol AstexViewer SPICE
3S17 K 29 - 105 Jmol AstexViewer SPICE
3S1M K 29 - 105 Jmol AstexViewer SPICE
3S1N K 29 - 105 Jmol AstexViewer SPICE
3S1Q K 29 - 105 Jmol AstexViewer SPICE
3S1R K 29 - 105 Jmol AstexViewer SPICE
3S2D K 29 - 105 Jmol AstexViewer SPICE
3S2H K 29 - 105 Jmol AstexViewer SPICE
4A3B K 29 - 105 Jmol AstexViewer SPICE
4A3C K 29 - 105 Jmol AstexViewer SPICE
4A3D K 29 - 105 Jmol AstexViewer SPICE
4A3E K 29 - 105 Jmol AstexViewer SPICE
4A3F K 29 - 105 Jmol AstexViewer SPICE
4A3G K 29 - 105 Jmol AstexViewer SPICE
4A3I K 29 - 105 Jmol AstexViewer SPICE
4A3J K 29 - 105 Jmol AstexViewer SPICE
4A3K K 29 - 105 Jmol AstexViewer SPICE
4A3L K 29 - 105 Jmol AstexViewer SPICE
4A3M K 29 - 105 Jmol AstexViewer SPICE
4A93 K 29 - 105 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.