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86  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPAB4_YEAST (P40422)

Summary

This is the summary of UniProt entry RPAB4_YEAST (P40422).

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC4
Source organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (NCBI taxonomy ID 559292)
View Pfam proteome data.
Length: 70 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
low_complexity n/a 14 26
Pfam A DNA_RNApol_7kD 29 60

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P40422. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSREGFQIPT NLDAAAAGTS QARTATLKYI CAECSSKLSL SRTDAVRCKD
50
51
CGHRILLKAR TKRLVQFEAR                                 
70
 

Show the unformatted sequence.

Checksums:
CRC64:066A3D982EC7361E
MD5:259d7448d169076d966e06edd16775d9

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
DNA_RNApol_7kD 29 - 60 1I3Q L 29 - 60 Jmol AstexViewer SPICE
1I50 L 29 - 60 Jmol AstexViewer SPICE
1I6H L 29 - 60 Jmol AstexViewer SPICE
1K83 L 29 - 60 Jmol AstexViewer SPICE
1NIK L 29 - 60 Jmol AstexViewer SPICE
1R5U L 29 - 60 Jmol AstexViewer SPICE
1R9S L 29 - 60 Jmol AstexViewer SPICE
1R9T L 29 - 60 Jmol AstexViewer SPICE
1SFO L 29 - 60 Jmol AstexViewer SPICE
1TWA L 29 - 60 Jmol AstexViewer SPICE
1TWC L 29 - 60 Jmol AstexViewer SPICE
1TWF L 29 - 60 Jmol AstexViewer SPICE
1TWG L 29 - 60 Jmol AstexViewer SPICE
1TWH L 29 - 60 Jmol AstexViewer SPICE
1WCM L 29 - 60 Jmol AstexViewer SPICE
1Y1V L 29 - 60 Jmol AstexViewer SPICE
1Y1W L 29 - 60 Jmol AstexViewer SPICE
1Y77 L 29 - 60 Jmol AstexViewer SPICE
2B63 L 29 - 60 Jmol AstexViewer SPICE
2B8K L 29 - 60 Jmol AstexViewer SPICE
2E2H L 29 - 60 Jmol AstexViewer SPICE
2E2I L 29 - 60 Jmol AstexViewer SPICE
2E2J L 29 - 60 Jmol AstexViewer SPICE
2JA5 L 29 - 60 Jmol AstexViewer SPICE
2JA6 L 29 - 60 Jmol AstexViewer SPICE
2JA7 L 29 - 60 Jmol AstexViewer SPICE
X 29 - 60 Jmol AstexViewer SPICE
2JA8 L 29 - 60 Jmol AstexViewer SPICE
2NVQ L 29 - 60 Jmol AstexViewer SPICE
2NVT L 29 - 60 Jmol AstexViewer SPICE
2NVX L 29 - 60 Jmol AstexViewer SPICE
2NVY L 29 - 60 Jmol AstexViewer SPICE
2NVZ L 29 - 60 Jmol AstexViewer SPICE
2R7Z L 29 - 60 Jmol AstexViewer SPICE
2R92 L 29 - 60 Jmol AstexViewer SPICE
2R93 L 29 - 60 Jmol AstexViewer SPICE
2VUM L 29 - 60 Jmol AstexViewer SPICE
2YU9 L 29 - 60 Jmol AstexViewer SPICE
3CQZ L 29 - 60 Jmol AstexViewer SPICE
3FKI L 29 - 60 Jmol AstexViewer SPICE
3GTG L 29 - 60 Jmol AstexViewer SPICE
3GTJ L 29 - 60 Jmol AstexViewer SPICE
3GTK L 29 - 60 Jmol AstexViewer SPICE
3GTL L 29 - 60 Jmol AstexViewer SPICE
3GTM L 29 - 60 Jmol AstexViewer SPICE
3GTO L 29 - 60 Jmol AstexViewer SPICE
3GTP L 29 - 60 Jmol AstexViewer SPICE
3GTQ L 29 - 60 Jmol AstexViewer SPICE
3H3V M 29 - 60 Jmol AstexViewer SPICE
3HOU L 29 - 60 Jmol AstexViewer SPICE
X 29 - 60 Jmol AstexViewer SPICE
3HOV L 29 - 60 Jmol AstexViewer SPICE
3HOW L 29 - 60 Jmol AstexViewer SPICE
3HOX L 29 - 60 Jmol AstexViewer SPICE
3HOY L 29 - 60 Jmol AstexViewer SPICE
3HOZ L 29 - 60 Jmol AstexViewer SPICE
3I4M L 29 - 60 Jmol AstexViewer SPICE
3I4N L 29 - 60 Jmol AstexViewer SPICE
3K1F L 29 - 60 Jmol AstexViewer SPICE
3K7A L 29 - 60 Jmol AstexViewer SPICE
3M3Y L 29 - 60 Jmol AstexViewer SPICE
3M4O L 29 - 60 Jmol AstexViewer SPICE
3PO2 L 29 - 60 Jmol AstexViewer SPICE
3PO3 L 29 - 60 Jmol AstexViewer SPICE
3QT1 L 29 - 60 Jmol AstexViewer SPICE
3RZD L 29 - 60 Jmol AstexViewer SPICE
3S14 L 29 - 60 Jmol AstexViewer SPICE
3S15 L 29 - 60 Jmol AstexViewer SPICE
3S16 L 29 - 60 Jmol AstexViewer SPICE
3S17 L 29 - 60 Jmol AstexViewer SPICE
3S1M L 29 - 60 Jmol AstexViewer SPICE
3S1N L 29 - 60 Jmol AstexViewer SPICE
3S1Q L 29 - 60 Jmol AstexViewer SPICE
3S1R L 29 - 60 Jmol AstexViewer SPICE
3S2D L 29 - 60 Jmol AstexViewer SPICE
3S2H L 29 - 60 Jmol AstexViewer SPICE
4A3B L 29 - 60 Jmol AstexViewer SPICE
4A3C L 29 - 60 Jmol AstexViewer SPICE
4A3D L 29 - 60 Jmol AstexViewer SPICE
4A3E L 29 - 60 Jmol AstexViewer SPICE
4A3F L 29 - 60 Jmol AstexViewer SPICE
4A3G L 29 - 60 Jmol AstexViewer SPICE
4A3I L 29 - 60 Jmol AstexViewer SPICE
4A3J L 29 - 60 Jmol AstexViewer SPICE
4A3K L 29 - 60 Jmol AstexViewer SPICE
4A3L L 29 - 60 Jmol AstexViewer SPICE
4A3M L 29 - 60 Jmol AstexViewer SPICE
4A93 L 29 - 60 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.