Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: SODM2_CAEEL (P41977)

Summary

This is the summary of UniProt entry SODM2_CAEEL (P41977).

Description: Superoxide dismutase [Mn] 2, mitochondrial EC=1.15.1.1
Source organism: Caenorhabditis elegans (NCBI taxonomy ID 6239)
View Pfam proteome data.
Length: 218 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Sod_Fe_N 25 106
Pfam A Sod_Fe_C 110 213

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P41977. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MLQSTARTAS KLVQPVAGVL AVRSKHTLPD LPFDYADLEP VISHEIMQLH
50
51
HQKHHATYVN NLNQIEEKLH EAVSKGNLKE AIALQPALKF NGGGHINHSI
100
101
FWTNLAKDGG EPSKELMDTI KRDFGSLDNL QKRLSDITIA VQGSGWGWLG
150
151
YCKKDKILKI ATCANQDPLE GMVPLFGIDV WEHAYYLQYK NVRPDYVHAI
200
201
WKIANWKNIS ERFANARQ                                   
218
 

Show the unformatted sequence.

Checksums:
CRC64:F35375C9E63BCDC7
MD5:7fd2a8f96820b48ae910ba10c86bfa82

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Sod_Fe_C 110 - 213 3DC5 A 86 - 189 Jmol AstexViewer SPICE
C 86 - 189 Jmol AstexViewer SPICE
Sod_Fe_N 25 - 106 3DC5 A 1 - 82 Jmol AstexViewer SPICE
C 1 - 82 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.