Summary
This is the summary of UniProt entry DCOR_LACS3 (P43099).
| Description: | Ornithine decarboxylase, inducible EC=4.1.1.17 |
| Source organism: |
Lactobacillus sp. (strain 30a)
(NCBI taxonomy ID
1593)
|
| Length: | 731 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| Pfam A | OKR_DC_1_N | 5 | 103 |
| Pfam A | OKR_DC_1 | 109 | 552 |
| disorder | n/a | 365 | 366 |
| low_complexity | n/a | 559 | 564 |
| Pfam A | OKR_DC_1_C | 577 | 710 |
| disorder | n/a | 729 | 731 |
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Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
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Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession P43099. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MSSSLKIAST QEARQYFDTD RVVVDAVGSD FTDVGAVIAM DYETDVIDAA
50 51
DATKFGIPVF AVTKDAQAIS ADELKKIFHI IDLENKFDAT VNAREIETAV
100 101
NNYEDSILPP FFKSLKEYVS RGLIQFDCPG HQGGQYYRKH PAGREFYDFF
150 151
GETVFRADLC NADVALGDLL IHEGPAVAAE KHAARVYNAD KTYFVLGGSS
200 201
NANNTVTSAL VSNGDLVLFD RNNHKSVYNS ALAMAGGRPV YLQTNRNPYG
250 251
FIGGIYDSDF DEKKIRELAA KVDPERAKWK RPFRLAVIQL GTYDGTIYNA
300 301
HEVVKRIGHL CDYIEFDSAW VGYEQFIPMM RNSSPLLIDD LGPEDPGIIV
350 351
VQSVHKQQAG FSQTSQIHKK DSHIKGQLRY CDHKHFNNSF NLFMSTSPFY
400 401
PMYAALDVNA AMQEGEAGRK LWHDLLITTI EARKKLIKAG SMFRPFVPPV
450 451
VNGKKWEDGD TEDMANNIDY WRFEKGAKWH AYEGYGDNQY YVDPNKFMLT
500 501
TPGINPETGD YEDFGVPATI VANYLRDHGI IPEKSDLNSI LFLMTPAETP
550 551
AKMNNLITQL LQLQRLIEED APLKQVLPSI YAANEERYNG YTIRELCQEL
600 601
HDFYKNNNTF TYQKRLFLRE FFPEQGMLPY EARQEFIRNH NKLVPLNKIE
650 651
GEIALEGALP YPPGVFCVAP GEKWSETAVK YFTILQDGIN NFPGFAPEIQ
700 701
GVYFKQEGDK VVAYGEVYDA EVAKNDDRYN N
731
Show the unformatted sequence. |
| Checksums: |
CRC64:3652214455C956AF
MD5:c6e8bb632086349f42b44706efd34bce
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.
| Pfam family | UniProt residues | PDB ID | PDB chain ID | PDB residues | View |
|---|---|---|---|---|---|
| OKR_DC_1 | 109 - 552 | 1C4K | A | 108 - 551 | Jmol AstexViewer SPICE |
| 1ORD | A | 108 - 551 | Jmol AstexViewer SPICE | ||
| B | 108 - 551 | Jmol AstexViewer SPICE | |||
| OKR_DC_1_C | 577 - 710 | 1C4K | A | 576 - 709 | Jmol AstexViewer SPICE |
| 1ORD | A | 576 - 709 | Jmol AstexViewer SPICE | ||
| B | 576 - 709 | Jmol AstexViewer SPICE | |||
| OKR_DC_1_N | 5 - 103 | 1C4K | A | 4 - 102 | Jmol AstexViewer SPICE |
| 1ORD | A | 4 - 102 | Jmol AstexViewer SPICE | ||
| B | 4 - 102 | Jmol AstexViewer SPICE |