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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: AMYA_ASPNG (P56271)

Summary

This is the summary of UniProt entry AMYA_ASPNG (P56271).

Description: Acid alpha-amylase EC=3.2.1.1
Source organism: Aspergillus niger (NCBI taxonomy ID 5061)
Length: 484 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Alpha-amylase 40 341
Pfam A DUF1966 386 475
low_complexity n/a 413 432

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P56271. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
LSAASWRTQS IYFLLTDRFG RTDNSTTATC NTGNEIYCGG SWQGIIDHLD
50
51
YIEGMGFTAI WISPITEQLP QDTADGEAYH GYWQQKIYDV NSNFGTADNL
100
101
KSLSDALHAR GMYLMVDVVP DHMGYAGNGN DVDYSVFDPF DSSSYFHPYC
150
151
LITDWDNLTM VEDCWEGDTI VSLPDLDTTE TAVRTIWYDW VADLVSNYSV
200
201
DGLRIDSVLE VQPDFFPGYN KASGVYCVGE IDNGNPASDC PYQKVLDGVL
250
251
NYPIYWQLLY AFESSSGSIS NLYNMIKSVA SDCSDPTLLG NFIENHDNPR
300
301
FAKYTSDYSQ AKNVLSYIFL SDGIPIVYAG EEQHYAGGKV PYNREATWLS
350
351
GYDTSAELYT WIATTNAIRK LAIAADSAYI TYANDAFYTD SNTIAMAKGT
400
401
SGSQVITVLS NKGSSGSSYT LTLSGSGYTS GTKLIEAYTC TSVTVDSSGD
450
451
IPVPMASGLP RVLLPASVVD SSSLCGGSGR LYVE                 
484
 

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Checksums:
CRC64:04D596E34680656D
MD5:273bca92bdcba8cec104fdc37a8b6a89

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Alpha-amylase 40 - 341 2AAA A 40 - 341 Jmol AstexViewer SPICE
DUF1966 386 - 475 2AAA A 386 - 475 Jmol AstexViewer SPICE